{"id":1953,"date":"2023-09-27T15:38:11","date_gmt":"2023-09-27T15:38:11","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-phyton-materials\/introduction\/analysing-data\/"},"modified":"2026-03-10T10:21:27","modified_gmt":"2026-03-10T10:21:27","slug":"analysing-data","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/analysing-data\/","title":{"rendered":"Analysing data"},"content":{"rendered":"\n<p id=\"block-745a9741-9262-4782-924f-bfa45aa5f0ac\">This section will cover the general workflow of the scRNA-seq analysis using Python from analysis design to final visualisation.<\/p>\n\n\n\n<ul id=\"block-3a8dd2a9-711e-463f-869e-fc2dc69ddc9a\" class=\"wp-block-list\">\n<li><a href=\"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/analysing-data\/designing-your-analysis\/\">Designing your analysis<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/analysing-data\/dimensionality-reduction-clustering-and-annotation\/\">Dimensionality reduction, clustering and annotation<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/analysing-data\/batch-correction-and-data-integration\/\">Batch correction and data integration<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/analysing-data\/single-cell-spatial-transcriptomics\/\">Spatial transcriptomics<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/analysing-data\/abundance-and-differential-expression\/\">Abundance and differential expression<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/analysing-data\/multi-omics\/\">Multiomics<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/analysing-data\/trajectory-analysis\/\">Trajectory analysis<\/a><\/li>\n<\/ul>\n\n\n\n<p>Proceed through this section to view materials on all these topics or select a specific session from the above list to jump ahead.<\/p>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>This section will cover the general workflow of the scRNA-seq analysis using Python from analysis design to final visualisation. Proceed through this section to view materials on all these topics or select a specific session from the above list to jump ahead.<\/p>\n","protected":false},"author":28,"featured_media":0,"parent":0,"menu_order":3,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-1953","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages\/1953","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/users\/28"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/comments?post=1953"}],"version-history":[{"count":9,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages\/1953\/revisions"}],"predecessor-version":[{"id":2393,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages\/1953\/revisions\/2393"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/media?parent=1953"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}