{"id":1947,"date":"2023-09-27T15:31:15","date_gmt":"2023-09-27T15:31:15","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-phyton-materials\/processing-data\/"},"modified":"2024-10-03T14:51:18","modified_gmt":"2024-10-03T14:51:18","slug":"processing-data","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/processing-data\/","title":{"rendered":"Processing data"},"content":{"rendered":"\n<p id=\"block-745a9741-9262-4782-924f-bfa45aa5f0ac\">This section will repeat the course of analysis of scRNA-seq data from raw reads to cluster maps, quality control, pre-processing and normalisation. It will also cover how to search data in the Single cell Expression Atlas and submit data using Annotare tool.<\/p>\n\n\n\n<ul class=\"wp-block-list\" id=\"block-3a8dd2a9-711e-463f-869e-fc2dc69ddc9a\">\n<li><a href=\"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/processing-data\/raw-reads-to-expression-matrix\/\">Raw reads to expression matrix<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/processing-data\/qc-pre-processing-and-normalisation\/\" data-type=\"link\" data-id=\"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/processing-data\/qc-pre-processing-and-normalisation\/\">QC, Pre-processing and Normalisation<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/processing-data\/single-cell-expression-atlas\/\">Single cell Expression Atlas<\/a><\/li>\n<\/ul>\n\n\n\n<p>Proceed through this section to view materials on all these topics or select a specific session from the above list to jump ahead.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>This section will repeat the course of analysis of scRNA-seq data from raw reads to cluster maps, quality control, pre-processing and normalisation. It will also cover how to search data in the Single cell Expression Atlas and submit data using Annotare tool. Proceed through this section to view materials on all these topics or select&#8230;<\/p>\n","protected":false},"author":28,"featured_media":0,"parent":0,"menu_order":2,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-1947","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages\/1947","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/users\/28"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/comments?post=1947"}],"version-history":[{"count":4,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages\/1947\/revisions"}],"predecessor-version":[{"id":2197,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages\/1947\/revisions\/2197"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/media?parent=1947"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}