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Single cell RNA-seq analysis using Python

  • Overview
  • Search
  • Course Content
  • Planing your experiment
    • Wet-lab overview 
    • Dry-lab overview
    • Experimental design
  • Processing data
    • Raw reads to expression matrix
    • QC, pre-processing and normalisation
    • Single cell Expression Atlas and single cell data submission
  • Analysing data
    • Designing your analysis
    • Dimensionality reduction, clustering, and annotation
    • Batch correction and data integration
    • Spatial transcriptomics
    • Abundance and differential expression
  • Technical help sheet
  • Trainer biographies
  • Further learning
  • Your feedback

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Planing your experiment

This section will introduce single-cell RNA-seq technologies and explain the steps in the scRNA-seq analysis pipelines.

  • Keynote: Single cell, Single nucleus and Spatial Transcriptomics of PSC
  • Experimental design
  • Wet-lab overview
  • Dry-lab overview

Proceed through this section to view materials on all these topics or select a specific session from the above list to jump ahead.

  • page navigation-left-circle-1_1 Course Content
  • pageWet-lab overview  navigation-right-circle-1_1