{"id":13,"date":"2021-04-14T14:01:45","date_gmt":"2021-04-14T14:01:45","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/training\/materials\/template\/day-2\/"},"modified":"2025-02-18T12:27:23","modified_gmt":"2025-02-18T12:27:23","slug":"day-2","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-handbook-2025\/programme-2\/day-2\/","title":{"rendered":"Day two"},"content":{"rendered":"\n

Day two \u2013 Tuesday 18 February – Processing data<\/strong><\/h2>\n\n\n\n
08:00 \u2014 09:00<\/td>Designing your analysis (pre-recorded)<\/td>Tallulah Andrews<\/td><\/tr>
09:00 \u2014 09:40<\/td>Getting set up: data set, workflow and environment setup<\/td>Anna Vathrakokoili Pournara<\/td><\/tr>
09:40 \u2013 10:00 <\/strong><\/td>Break  <\/strong><\/td> <\/td><\/tr>
10:00 \u2014 11:00 <\/td>Raw reads to expression matrix  \u2014 Talk and Q&A<\/td>Jiawei Wang and Jinzheng Ren<\/td><\/tr>
11:00 \u2014 12:30 <\/td>QC, Pre-processing, & Normalisation (pre-recorded talk and practical demo)<\/td>Yuyao Song, Hugo Tavares and Iris Yu<\/td><\/tr>
12:30 \u2014 13:30  <\/strong><\/td>Lunch break  <\/strong><\/td> <\/td><\/tr>
13:30 \u2014 14:20 <\/td>Feature selection and dimensionality reduction \u2014 Talk and Q&A<\/td>Anna Vathrakokoili Pournara<\/td><\/tr>
14:20 \u201415:00<\/td>Batch correction and data set integration \u2014 Talk and Q&A<\/td>Yuyao Song<\/td><\/tr>
15:00 \u2014 15:30  <\/strong><\/td>Break<\/strong><\/td><\/td><\/tr>
15:30 \u2014 16:30<\/strong><\/td>Posters and Networking  <\/strong><\/td> <\/td><\/tr><\/tbody><\/table><\/figure>\n","protected":false},"excerpt":{"rendered":"

Day two \u2013 Tuesday 18 February – Processing data 08:00 \u2014 09:00 Designing your analysis (pre-recorded) Tallulah Andrews 09:00 \u2014 09:40 Getting set up: data set, workflow and environment setup Anna Vathrakokoili Pournara 09:40 \u2013 10:00  Break     10:00 \u2014 11:00  Raw reads to expression matrix  \u2014 Talk and Q&A Jiawei Wang and Jinzheng Ren 11:00…<\/p>\n","protected":false},"author":3,"featured_media":0,"parent":11,"menu_order":1,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-13","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-handbook-2025\/wp-json\/wp\/v2\/pages\/13","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-handbook-2025\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-handbook-2025\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-handbook-2025\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-handbook-2025\/wp-json\/wp\/v2\/comments?post=13"}],"version-history":[{"count":23,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-handbook-2025\/wp-json\/wp\/v2\/pages\/13\/revisions"}],"predecessor-version":[{"id":3313,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-handbook-2025\/wp-json\/wp\/v2\/pages\/13\/revisions\/3313"}],"up":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-handbook-2025\/wp-json\/wp\/v2\/pages\/11"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-handbook-2025\/wp-json\/wp\/v2\/media?parent=13"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}