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Single-cell RNA-seq analysis using Galaxy

  • Overview
  • Search
  • Course content
  • Introduction to single-cell RNA seq technologies
    • Keynote | Lecture
    • Experimental design of single-cell studies | Lecture
    • Droplet-based library generation overview | Lecture & activity
    • Pipeline overview
  • Downstream analysis
    • Pre-processing & batch correction | Lecture
    • Designing your analysis | Lecture
  • Single-cell RNA seq analysis using Galaxy
    • Introduction to Galaxy | Lecture & Practical
    • From fasta to matrix | Lecture & Practical
    • Filter, plot & explore | Practical
    • Trajectory analysis using Monocle 3 | Practical
    • Bulk deconvolution | Practical
  • Submitting and finding single cell data
    • Single cell data submission
    • Single cell Expression Atlas
  • Trainer biographies
  • Further learning
  • Your feedback

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All materials are free cultural works licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) license, except where further licensing details are provided.

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Single cell data submission

Trainer: Nancy George

Overview:

This session will describe how to get started with single-cell submission using the single cell sequencing template in Annotare.

Materials:

  • Single cell submission guide
  • page navigation-left-circle-1_1 Submitting and finding single cell data
  • pageSingle cell Expression Atlas navigation-right-circle-1_1