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Single-cell RNA-seq analysis using Galaxy
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Single-cell RNA-seq analysis using Galaxy
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Overview
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Course content
Introduction to single-cell RNA seq technologies
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Keynote | Lecture
Experimental design of single-cell studies | Lecture
Droplet-based library generation overview | Lecture & activity
Pipeline overview
Downstream analysis
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Pre-processing & batch correction | Lecture
Designing your analysis | Lecture
Single-cell RNA seq analysis using Galaxy
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Introduction to Galaxy | Lecture & Practical
From fasta to matrix | Lecture & Practical
Filter, plot & explore | Practical
Trajectory analysis using Monocle 3 | Practical
Bulk deconvolution | Practical
Submitting and finding single cell data
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Single cell data submission
Single cell Expression Atlas
Trainer biographies
Further learning
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