{"id":710,"date":"2021-06-28T07:42:08","date_gmt":"2021-06-28T07:42:26","guid":{"rendered":"http:\/\/www.ebi.ac.uk\/training\/materials\/proteomics-bioinformatics-temp-temp\/pre-course-homework\/the-reactome-knowledgebase-thawfeek-varusai\/"},"modified":"2023-02-21T23:23:04","modified_gmt":"2023-02-21T23:23:04","slug":"the-reactome-knowledgebase-thawfeek-varusai","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/materials\/proteomics-bioinformatics-materials\/protein-interaction-and-network-analysis\/the-reactome-knowledgebase-thawfeek-varusai\/","title":{"rendered":"The Reactome Knowledgebase"},"content":{"rendered":"\n<p class=\"wp-block-paragraph\"><strong>Trainer:<\/strong> Thawfeek Varusai, Eliot Ragueneau,\u000bKrishna Tiwari<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Overview:<\/strong> In this session, we will introduce you to Reactome and various in-built analyses tools that will help you to understand your proteomics data better.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Learning outcomes<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">By the end of this session you will be able to:<\/p>\n\n\n\n<ul class=\"wp-block-list\"><li>Define what Reactome database is<\/li><li>Cite the types of reaction types in Reactome database<\/li><li>Search the Reactome website<\/li><li>Navigate reactions using the Pathway Browser<\/li><li>Export pathway data<\/li><\/ul>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Materials:<\/strong><\/p>\n\n\n\n<ul class=\"wp-block-list\"><li><a href=\"https:\/\/ftp.ebi.ac.uk\/pub\/training\/2022\/Proteomics_Bioinformatics_2022\/Day%204\/Reactome\/Reactome_Introduction_EliotRagueneau.pdf\" data-type=\"URL\" data-id=\"https:\/\/ftp.ebi.ac.uk\/pub\/training\/2022\/Proteomics_Bioinformatics_2022\/Day%204\/Reactome\/Reactome_Introduction_EliotRagueneau.pdf\" target=\"_blank\" rel=\"noreferrer noopener\">The reactome Knowledgebase: lecture<\/a><\/li><\/ul>\n\n\n\n<iframe loading=\"lazy\" src=\"https:\/\/embl-ebi.cloud.panopto.eu\/Panopto\/Pages\/Embed.aspx?id=6b3f5256-3c04-4803-86ca-ad5200df3967&amp;autoplay=false&amp;offerviewer=true&amp;showtitle=true&amp;showbrand=false&amp;captions=false&amp;interactivity=all\" height=\"405\" width=\"720\" style=\"border: 1px solid #464646;\" allowfullscreen=\"\" allow=\"autoplay\"><\/iframe>\n\n\n\n<div style=\"height:28px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Additional materials:<\/strong><\/p>\n\n\n\n<ul class=\"wp-block-list\"><li>Reactome paper:\u00a0<a href=\"https:\/\/academic.oup.com\/nar\/article\/48\/D1\/D498\/5613674\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/academic.oup.com\/nar\/article\/48\/D1\/D498\/5613674<\/a><\/li><li>EBI self-paced training courses:<ul><li>Beginner:\u00a0<a href=\"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/reactome-quick-tour\/\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/www.ebi.ac.uk\/training\/online\/courses\/reactome-quick-tour\/<\/a><\/li><li>Intermediate:\u00a0<a href=\"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/reactome-exploring-biological-pathways\/\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/www.ebi.ac.uk\/training\/online\/courses\/reactome-exploring-biological-pathways\/<\/a><\/li><li>Advanced:\u00a0<a href=\"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/reactome-tools-for-analysing-biological-pathways\/\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/www.ebi.ac.uk\/training\/online\/courses\/reactome-tools-for-analysing-biological-pathways\/<\/a><\/li><li>Advanced:\u00a0<a href=\"https:\/\/www.ebi.ac.uk\/training\/events\/multiomics-comparative-pathway-analysis-reactomegsa\/\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/www.ebi.ac.uk\/training\/events\/multiomics-comparative-pathway-analysis-reactomegsa\/<\/a><\/li><\/ul><\/li><\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Trainer: Thawfeek Varusai, Eliot Ragueneau,\u000bKrishna Tiwari Overview: In this session, we will introduce you to Reactome and various in-built analyses tools that will help you to understand your proteomics data better. Learning outcomes By the end of this session you will be able to: Define what Reactome database is Cite the types of reaction types&#8230;<\/p>\n","protected":false},"author":48,"featured_media":0,"parent":1569,"menu_order":2,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-710","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/proteomics-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/710","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/proteomics-bioinformatics-materials\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/proteomics-bioinformatics-materials\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/proteomics-bioinformatics-materials\/wp-json\/wp\/v2\/users\/48"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/proteomics-bioinformatics-materials\/wp-json\/wp\/v2\/comments?post=710"}],"version-history":[{"count":10,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/proteomics-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/710\/revisions"}],"predecessor-version":[{"id":1971,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/proteomics-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/710\/revisions\/1971"}],"up":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/proteomics-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/1569"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/proteomics-bioinformatics-materials\/wp-json\/wp\/v2\/media?parent=710"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}