Course content
To see details about the live Bioinformatics resources for protein biology course and the original programme, you can refer to the course page and programme.
The contents table below outlines the different sessions that were included in the course, as well as the format of the materials (slides/videos/practicals) and each session’s trainer. Either proceed through the materials using the arrows at the end of each page or pick your topic of interest from the table below to skip straight to it.
Presentation slides – View or download the slides
Recorded lectures – Watch the lecture videos
Practicals – View or download the slides, exercises, datasets, analysis scripts and results
| Format | Subject | Trainer |
| Protein function – UniProt | ||
| Introduction to the UniProt data resource | Pedro Raposo and Paul Denny |
| Programmatic access to UniProt | Daniel Rice / Aurélien Luciani |
| Sequence classification – Pfam, InterPro | ||
| Introduction to Pfam and InterPro | Typhaine Paysan-Lafosse, Sara Chuguransky |
| Programmatic access to InterPro | Typhaine Paysan-Lafosse, Sara Chuguransky |
| Protein structures – PDBe, PDBe-KB and AlphaFold DB | ||
| Introduction to PDBe, PDBe-KB and AlphaFold DB | David Armstrong, Sudakshina Ganguly, Paulyna Magaña |
| Programmatic access to PDBe | David Armstrong |
| Protein structures – EMDB/EMPIAR | ||
| Protein structures – EMDB/EMPIAR | Jack Turner |
| Molecular interactions – IntAct and ComplexPortal | ||
| Molecular interactions – IntAct and ComplexPortal | Kalpana Panneerselvam, Eliot Ragueneau and Juan Jose Medina Reyes |
| Pathways – Reactome | ||
| Pathways – Reactome | Eliot Ragueneau and Juan Jose Medina Reyes |
| Use-cases combining all data resources | ||
| Use-cases combining all data resources | |
| General introduction to programmatic access | ||
| General introduction to programmatic access | Nandana Madhusoodanan |