{"id":1692,"date":"2021-12-09T15:26:44","date_gmt":"2021-12-09T15:26:44","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/introduction\/practical-session-on-machine-learning\/"},"modified":"2022-01-26T11:04:28","modified_gmt":"2022-01-26T11:04:28","slug":"practical-session-on-machine-learning","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/introduction-to-image-analysis\/practical-session-on-machine-learning\/","title":{"rendered":"Practical session on machine learning"},"content":{"rendered":"\n<p class=\"wp-block-paragraph\"><strong>Trainer:<\/strong>&nbsp;<a href=\"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/trainer-biographies\/\">Craig Russell, Romain Laine &amp; Maria Theiss<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Overview:<\/strong>&nbsp; In this session you will learn about managing and preparing your data for machine learning.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Learning outcomes<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">By the end of this session you will be able to:<\/p>\n\n\n\n<ul class=\"wp-block-list\"><li>Describe workflow management systems and their benefits<\/li><li>Build and run a <a href=\"https:\/\/snakemake.readthedocs.io\/en\/stable\/tutorial\/basics.html\" target=\"_blank\" rel=\"noreferrer noopener\">Snakemake pipeline<\/a><\/li><\/ul>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Materials:<\/strong><\/p>\n\n\n\n<ul class=\"wp-block-list\"><li><a rel=\"noreferrer noopener\" href=\"http:\/\/ftp.ebi.ac.uk\/pub\/training\/2021\/Microscopy_image_analysis_July2021\/The_Bioimage_Archive\/BioImage_Practical-Rusell_Laine_Theiss.pdf\" target=\"_blank\">Presentation slides<\/a><\/li><li><a rel=\"noreferrer noopener\" href=\"http:\/\/ftp.ebi.ac.uk\/pub\/training\/2021\/Microscopy_image_analysis_July2021\/The_Bioimage_Archive\/FIJI-2D_annotation_tutorial\/\" target=\"_blank\">Images<\/a><\/li><li><a rel=\"noreferrer noopener\" href=\"https:\/\/github.com\/bioimagearchive\/2020_training_course\/tree\/master\/snakemake\" target=\"_blank\">Snakemake demo<\/a><\/li><li><a rel=\"noreferrer noopener\" href=\"ftp:\/\/ftp.ebi.ac.uk\/biostudies\/nfs\/S-BSST\/666\/S-BSST666\/Files\/ZeroCostDl4Mic\/Stardist_v2\/Stardist\" target=\"_blank\">StarDist folder<\/a><\/li><li><a rel=\"noreferrer noopener\" href=\"http:\/\/ftp.ebi.ac.uk\/pub\/training\/2021\/Microscopy_image_analysis_July2021\/The_Bioimage_Archive\/Docker_Hartley.pdf\" target=\"_blank\">Docker<\/a> &#8211; Containerisation for scientific computing<\/li><\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Trainer:&nbsp;Craig Russell, Romain Laine &amp; Maria Theiss Overview:&nbsp; In this session you will learn about managing and preparing your data for machine learning. Learning outcomes By the end of this session you will be able to: Describe workflow management systems and their benefits Build and run a Snakemake pipeline Materials: Presentation slides Images Snakemake demo&#8230;<\/p>\n","protected":false},"author":4,"featured_media":0,"parent":1700,"menu_order":2,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-1692","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/pages\/1692","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/users\/4"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/comments?post=1692"}],"version-history":[{"count":6,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/pages\/1692\/revisions"}],"predecessor-version":[{"id":1900,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/pages\/1692\/revisions\/1900"}],"up":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/pages\/1700"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/media?parent=1692"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}