{"id":1438,"date":"2021-10-18T12:11:05","date_gmt":"2021-10-18T12:11:05","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/programme\/day-1-2-3\/"},"modified":"2022-01-20T10:07:52","modified_gmt":"2022-01-20T10:07:52","slug":"zerocostdl4mic","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/introduction-to-image-analysis\/zerocostdl4mic\/","title":{"rendered":"ZeroCostDL4Mic: Exploring Deep-Learning in microscopy"},"content":{"rendered":"\n<p class=\"wp-block-paragraph\"><strong>Trainer:<\/strong>&nbsp;<a href=\"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/trainer-biographies\/\">Ricardo Henriques, Romain Laine &amp; Guillaume Jacquemet<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Overview:<\/strong>&nbsp; ZeroCostDL4Mic is a Google Colab based no-cost toolbox to explore Deep-Learning in microscopy. <\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Learning outcomes<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">By the end of this session you will be able to:<\/p>\n\n\n\n<ul class=\"wp-block-list\"><li>Describe the usage and main training steps of deep learning and Neural Networks in bioimage analysis<\/li><li>List machine learning tools applied to microscopy in biological fields<\/li><li>Locate open access collaborative projects for deep learning applied to microscopy<\/li><\/ul>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Materials:<\/strong><\/p>\n\n\n\n<ul class=\"wp-block-list\"><li><a rel=\"noreferrer noopener\" href=\"http:\/\/ftp.ebi.ac.uk\/pub\/training\/2021\/Microscopy_image_analysis_July2021\/ZeroCostDL4Mic\/ZeroCostDL4Mic-Laine.pdf\" target=\"_blank\">Link to presentation slides<\/a> &#8211; Introduction to ZeroCostDL4Mic<\/li><li><a rel=\"noreferrer noopener\" href=\"http:\/\/ftp.ebi.ac.uk\/pub\/training\/2021\/Microscopy_image_analysis_July2021\/ZeroCostDL4Mic\/ZeroCostDL4Mic-Jacquemet.pdf\" target=\"_blank\">Link to presentation slides<\/a> &#8211; Examples for application of ZeroCostDL4Mic<\/li><li><a rel=\"noreferrer noopener\" href=\"https:\/\/github.com\/HenriquesLab\/ZeroCostDL4Mic\" target=\"_blank\">Repository<\/a> &#8211; GitHub page for ZeroCostDL4Mic<\/li><\/ul>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Suggested reading article<\/strong><\/p>\n\n\n\n<ul class=\"wp-block-list\"><li><a href=\"https:\/\/www.nature.com\/articles\/s41467-021-22518-0\" target=\"_blank\" rel=\"noreferrer noopener\">Democratising deep learning for microscopy with ZeroCostDL4Mic<\/a><\/li><\/ul>\n\n\n\n<h3 class=\"wp-block-heading\">Practical session on using ZeroCostDL4Mic <\/h3>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Trainer:<\/strong>&nbsp;<a href=\"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/trainer-biographies\/\">Romain Laine, Craig Russell, Virginie Uhlmann &amp; Soham Mandal<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Overview:<\/strong>\u00a0 In this section you will learn about setting up a machine learning environment at home and then how to use ZeroCostDl4Mic.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Please note that you will require a <a rel=\"noreferrer noopener\" href=\"https:\/\/accounts.google.com\/signup\/v2\/webcreateaccount?hl=en&amp;flowName=GlifWebSignIn&amp;flowEntry=SignUp\" target=\"_blank\">Google account<\/a> for this practical. Please have one available before you start practicals.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Materials:<\/strong><\/p>\n\n\n\n<ul class=\"wp-block-list\"><li><a href=\"http:\/\/ftp.ebi.ac.uk\/pub\/training\/2021\/Microscopy_image_analysis_July2021\/ZeroCostDL4Mic\/ZeroCostDL4Mic-Rusell.pdf\" target=\"_blank\" rel=\"noreferrer noopener\">Link to presentation slides<\/a> &#8211; Craig Russell<\/li><li><a rel=\"noreferrer noopener\" href=\"http:\/\/ftp.ebi.ac.uk\/pub\/training\/2021\/Microscopy_image_analysis_July2021\/ZeroCostDL4Mic\/ZeroCostDL4Mic-Laine_Rusell_Uhlmann_Mandal.pdf\" target=\"_blank\">ZeroCost Homework<\/a><\/li><li><a rel=\"noreferrer noopener\" href=\"https:\/\/research.google.com\/colaboratory\/local-runtimes.html\" target=\"_blank\">Google colab<\/a><\/li><\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Trainer:&nbsp;Ricardo Henriques, Romain Laine &amp; Guillaume Jacquemet Overview:&nbsp; ZeroCostDL4Mic is a Google Colab based no-cost toolbox to explore Deep-Learning in microscopy. Learning outcomes By the end of this session you will be able to: Describe the usage and main training steps of deep learning and Neural Networks in bioimage analysis List machine learning tools applied&#8230;<\/p>\n","protected":false},"author":10,"featured_media":0,"parent":1700,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-1438","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/pages\/1438","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/users\/10"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/comments?post=1438"}],"version-history":[{"count":15,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/pages\/1438\/revisions"}],"predecessor-version":[{"id":1780,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/pages\/1438\/revisions\/1780"}],"up":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/pages\/1700"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/media?parent=1438"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}