{"id":1408,"date":"2021-10-18T11:56:20","date_gmt":"2021-10-18T11:56:20","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/programme\/day-2-2-2\/"},"modified":"2022-01-26T11:04:41","modified_gmt":"2022-01-26T11:04:41","slug":"biostudies","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/bioimage-databases-resources\/biostudies\/","title":{"rendered":"The BioStudies database"},"content":{"rendered":"\n<p class=\"wp-block-paragraph\"><strong>Trainer:<\/strong>&nbsp;<a href=\"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/trainer-biographies\/\">Ugis Sarkans &amp; Awais Athar<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Overview:<\/strong>&nbsp; The <a rel=\"noreferrer noopener\" href=\"https:\/\/www.ebi.ac.uk\/biostudies\/about\" target=\"_blank\">BioStudies database<\/a> holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. The database accepts submissions via an online tool, or in a simple tab-delimited format. It also enables authors to submit supplementary information and link to it from the publication.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Learning outcomes<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">By the end of this session you will be able to:<\/p>\n\n\n\n<ul class=\"wp-block-list\"><li>Identify the importance of the BioStudies database within the bioimage analysis perspective<\/li><li>Perform programatic and cloud access of bioimages thorough the BioStudies database<\/li><li>Practice with the DB&#8217;s data submission tool<\/li><\/ul>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Materials:<\/strong><\/p>\n\n\n\n<ul class=\"wp-block-list\"><li><a rel=\"noreferrer noopener\" href=\"http:\/\/ftp.ebi.ac.uk\/pub\/training\/2021\/Microscopy_image_analysis_July2021\/The_BioStudies_database-Sarkans_Athar.pdf\" target=\"_blank\">Presentation slides<\/a><\/li><li><a rel=\"noreferrer noopener\" href=\"https:\/\/github.com\/EBIBioStudies\/biostudies-notebooks\" target=\"_blank\">BioStudies notebooks<\/a><\/li><\/ul>\n\n\n\n<p class=\"wp-block-paragraph\"><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Trainer:&nbsp;Ugis Sarkans &amp; Awais Athar Overview:&nbsp; The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. The database accepts submissions via an online tool, or in a simple tab-delimited format&#8230;.<\/p>\n","protected":false},"author":10,"featured_media":0,"parent":1674,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-1408","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/pages\/1408","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/users\/10"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/comments?post=1408"}],"version-history":[{"count":8,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/pages\/1408\/revisions"}],"predecessor-version":[{"id":1902,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/pages\/1408\/revisions\/1902"}],"up":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/pages\/1674"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/media?parent=1408"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}