{"id":11,"date":"2021-04-14T14:01:45","date_gmt":"2021-04-14T14:01:45","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/training\/materials\/template\/programme\/"},"modified":"2022-01-25T11:42:56","modified_gmt":"2022-01-25T11:42:56","slug":"content","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/content\/","title":{"rendered":"Course content"},"content":{"rendered":"\n

To see details about the live Microscopy data analysis course and the original programme, you can refer to the\u00a0course page and programme<\/a>.<\/p>\n\n\n\n

The contents table below outlines the different sessions that were included in the course, as well as the format of the materials (slides\/videos\/practicals) and each session\u2019s trainer. Either proceed through the materials using the arrows at the end of each page or pick your topic of interest from the table below to skip straight to it.<\/p>\n\n\n\n

\"\" Presentation slides \u2013  View or download the slides<\/p>\n\n\n\n

\"\" Recorded lectures \u2013 Watch the lecture videos <\/p>\n\n\n\n

\"\" Practicals \u2013 View or download the slides, exercises, datasets, analysis scripts and results<\/p>\n\n\n\n

Format<\/strong><\/td>Subject<\/strong><\/td>Trainer<\/strong><\/td><\/tr>
<\/td>Introduction to image analysis<\/a><\/strong><\/td><\/td><\/tr>
<\/td>Introduction to image analysis<\/a><\/td>Alvis Brazma & Virginie Uhlmann<\/a><\/td><\/tr>
<\/td>Segmentation with StarDist and SplineDist<\/a><\/td>Martin Weigert, Soham Mandal, Virginie Uhlmann<\/a><\/td><\/tr>
\"\"<\/td>ZeroCostDL4Mic<\/a><\/td>Craig Ryusell, Virginie Uhlmann, Soham Mandal, Ricardo Henriques, Romain Laine Guillaume Jacquemet<\/a><\/td><\/tr>
<\/td>Introduction to bioimage databases and resources<\/a><\/strong><\/td><\/td><\/tr>
\"\"<\/td>The BioStudies database<\/a><\/td>Ugis Sarkans, Awais Athar<\/a><\/td><\/tr>
\"\"<\/td>The BioImage Archive<\/a><\/td>Matthew Hartley, Craig Russell, Romain Laine, Guillaume Jacquemet, Maria Tess<\/a><\/td><\/tr>
\"\"<\/td>EMPIAR<\/a><\/td>Gerard Kleywegt, Osman Salih, Andrii Iudin, Simone Weyand<\/a><\/td><\/tr>
\"\"<\/td>Image data resource – IDR<\/a><\/td>Jason Swedlow, Frances Wong, Jean Marie Burel, Petr Walczysko<\/a><\/td><\/tr>
<\/td>Image analysis tools<\/a><\/strong><\/td><\/td><\/tr>
\"\"<\/td>BioImage Model Zoo<\/a><\/td>Anna Kreshuk, ilastik team, Wei Ouyang, Esti Gomez de Mariscal, Dominik Kutra, Fynn Beuttenm\u00fcller<\/a><\/td><\/tr>
\"\"<\/td>CellProfiler<\/a><\/td>Beth Cimini, CellProfiler team, Nasim Jamali, David Stirling, Barbara Diaz-Rohrer<\/a><\/td><\/tr><\/tbody><\/table><\/figure>\n","protected":false},"excerpt":{"rendered":"

To see details about the live Microscopy data analysis course and the original programme, you can refer to the\u00a0course page and programme. The contents table below outlines the different sessions that were included in the course, as well as the format of the materials (slides\/videos\/practicals) and each session\u2019s trainer. Either proceed through the materials using…<\/p>\n","protected":false},"author":3,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-11","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/pages\/11","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/comments?post=11"}],"version-history":[{"count":41,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/pages\/11\/revisions"}],"predecessor-version":[{"id":1888,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/pages\/11\/revisions\/1888"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/microscopy-image-analysis-materials\/wp-json\/wp\/v2\/media?parent=11"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}