Technical help sheet

This course requires basic programming skills in Python. If you would like to refresh your Python skills for using these materials, please have a look at the following tutorial:

https://www.w3schools.com/python/

A few important links for practical materials used in this course:

• Build and run a Snakemake pipeline – useful in preparing data for machine learning
• GitHub link for BioStudies notebooks – Jupyter notebooks for loading and displaying data from BioStudies
• Notebooks for the second part of the practical – to demonstrate how to access the images and metadata from the Image Data Resource (IDR), including features and all descriptive tags
• Omero-guides containing other notebooks used in the practical – The OMERO guide offers step-by-step instructions on how to use components of the OMERO platform.
• GitHub page for advanced bioimage analysis workflows, tools and datasets
• GitHub page for CellProfiler practicals – Find useful tutorials and pipelines