ZeroCostDL4Mic: Exploring Deep-Learning in microscopy

Trainer: Ricardo Henriques, Romain Laine & Guillaume Jacquemet

Overview:  ZeroCostDL4Mic is a Google Colab based no-cost toolbox to explore Deep-Learning in microscopy.

Learning outcomes

By the end of this session you will be able to:

• Describe the usage and main training steps of deep learning and Neural Networks in bioimage analysis
• List machine learning tools applied to microscopy in biological fields
• Locate open access collaborative projects for deep learning applied to microscopy

Materials:

• Link to presentation slides – Introduction to ZeroCostDL4Mic
• Link to presentation slides – Examples for application of ZeroCostDL4Mic
• Repository – GitHub page for ZeroCostDL4Mic

Suggested reading article

• Democratising deep learning for microscopy with ZeroCostDL4Mic

Practical session on using ZeroCostDL4Mic

Trainer: Romain Laine, Craig Russell, Virginie Uhlmann & Soham Mandal

Overview:  In this section you will learn about setting up a machine learning environment at home and then how to use ZeroCostDl4Mic.

Please note that you will require a Google account for this practical. Please have one available before you start practicals.

Materials:

• Link to presentation slides – Craig Russell
• ZeroCost Homework
• Google colab