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Microscopy data analysis: machine learning and the BioImage Archive

    • Overview
    • Search
    • Course content
    • Basic concepts in bioimage analysis
      • General introduction
      • Bioimaging introduction, data formats, and metadata
      • Deep learning introduction
    • Public Bioimaging Data resources
      • The BioImage Archive (BIA)
        • BioImaging data resources at EMBL-EBI – an overview of the BioImage Archive, BioStudies and EMPIAR
        • BioImaging data resources at EMBL-EBI – practical
      • Image Data Resources (IDR)
        • Image data resource – introduction
        • Image data resource – Practical
    • Open access machine learning resources for bioimage analysis
      • Cellpose – lecture
      • DL4MicEverywhere
      • CellProfiler – lecture
      • CellProfiler – practical
      • Ilastik – lecture
      • Ilastik – practical
      • BioImage Model Zoo – lecture
      • Galaxy workflows for image analysis practical
    • Advanced topics in bioimage analysis
      • Working with public image data in OME-Zarr format
      • Advanced topics in bioimage analysis
    • Trainer biographies
    • Further learning
    • Technical help sheet
    • Your feedback