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Course content
Introduction to bioimage analysis
Bioimaging data resources at EMBL-EBI
- BioImaging data resources at EMBL-EBI – an overview of the BioImage Archive, BioStudies and EMPIAR
- BioImaging data resources at EMBL-EBI – practical
Open access machine learning resources for bioimage analysis
Image Data Resource – Discovery using community repositories
Advanced computational topics in the context of bioimage analysis
Technical help sheet
Trainer biographies
Further learning
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The Electron Microscopy Public Image Archive – EMPIAR

The Electron Microscopy Public Image Archive, is a public resource for raw images underpinning 3D cryo-EM maps and tomograms (themselves archived in EMDB). EMPIAR also accommodates 3D datasets obtained with volume EM techniques and soft and hard X-ray tomography. All data archived in EMPIAR can be re-used freely without any conditions or restrictions (“CC0” license model). This section includes:

Introduction to EMPIAR
MitoNet and EBI/EMPIAR: How datasets curated for AI helped create SOTA segmentation models for volume electron microscopy
Analysing vEM data with napari and EMPANADA – practical

These sessions were a part of the 2023 iteration of this course.

Microscopy data analysis: machine learning and the BioImage Archive

The Electron Microscopy Public Image Archive – EMPIAR