BioImaging data resources at EMBL-EBI – practical

Trainer: EMBL-EBI Teams, Matthew Hartley, Aybuke Kupcu Yoldas

Overview: 

This section covers practicals on different EMBL-EBI resources used in bioimage data analysis.

Learning outcomes:

After this section you should be able to:

• Identify the place of different EMBL-EBI bioimage resources in the scientific data ecosystem

Materials:

• Presentation
• BioImage Archive: https://www.ebi.ac.uk/bioimage-archive/
• BioImage Archive – Quick tour
• BioImage Archive API repository
• Simple example use bia explorer notebook
• List of ome-ngff tools
• Vizarr: https://hms-dbmi.github.io/vizarr, https://hms-dbmi.github.io/vizarr/?source=
• Working with public image data as OME-Zarr notebook