Quality control and decontamination: Lecture
Trainer: Christian Atallah and Jennifer Lu
This lecture explores the quality control of short read shotgun data – looking at potential sources of contamination and methods to identify low quality sequences and adapters.
Learning outcomes
After this session you should be able to:
- Visualise general quality statistics
- Identify widely used methodologies to perform read trimming, removal of sequence artifacts and host decontamination
Materials: