File formats and assessing quality of data (in terms of base calling)

Trainer: Sarah Inglesfield

Overview: 
This section covers RNA-seq file formats, other formats relate to RNA-seq technologies and final interpretation of data.

Learning outcomes

After this section you should be able to:

  • Identify the most common file formats used in RNA-seq that contain:
    • Reference data
    • Raw read data
    • Aligned reads
    • Coordinates, tubular data and experimental design

Materials: