Course content
To see details about the live Introduction to RNA-seq and functional interpretation course and the original programme, you can refer to the course page and programme.
The contents table below outlines the different sessions that were included in the course, as well as the format of the materials (presentations, videos, practicals, etc.) and each session’s trainers. Either proceed through the materials using the arrows at the end of each page or pick your topic of interest from the table below to skip straight to it.
Presentation slides – View or download the slides
Recorded lectures – Watch the lecture videos
Practicals – View or download the slides, exercises, datasets, analysis scripts, and results
| Format | Subject | Trainer | |
| RNA-Seq introduction and fundamentals | |||
| Experimenta design | Vladimir Benes | |
| Introduction to sequencing | Vladimir Benes | |
| RNA-seq QC and downstream analysis | |||
| File formats and assessing quality of data (in terms of base calling) | Sarah Inglesfield | |
| Reference-based approaches to RNA-seq analysis | Simon Lewis | |
| De novo approaches to RNA-Seq (practical) | Victor Flores-López and Alison Díaz-Cuevas | |
| Annotating the genome with RNA-seq data | Victor Flores-López and Alison Díaz-Cuevas | |
| Next steps in gene prioritisation | Ian Sealy | |
| RNA-Seq data best practices and data bases | |||
| Sequencing repositories | Sarah Inglesfield | |
| Data reproducibility: standards and ontologies –lecture and activity | Silvie Fexova | |
| Exploring gene expression data | Liora Vilmovsky | |
| Pipeline implementation workshop | |||
| Pipiline implementation workshop | Geraldine Van der Auwera |