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Genome-resolved metagenomics bioinformatics

    • Overview
    • Search
    • Course content
    • Course introduction
    • Experimental considerations of metagenomics
    • Quality control and decontamination
      • Quality control and decontamination – Lecture
      • Quality control and decontamination -practical
    • Assembly and annotation
      • Tools to assemble short- and long- reads: lecture
      • Assembly and co-assembly: practical
      • Introduction to Viral Annotations: practical
    • Binning and MAG generation
      • Binning and MAG generation: lecture
      • Binning and MAG generation: practical
    • The European Nucleotide Archive – ENA
      • The European Nucleotide Archive – Lecture
      • ENA Metagenomics Standards and MAG layer – Lecture
    • MGnify MAG resources
      • MGnify MAG resources: lecture
      • Programmatic access to MGnify resources with APIs and notebooks: practical
    • Strain resolution
      • Strain resolution – Lecture
      • Strain resolution – Practical
    • Comparative metagenome analysis
      • Comparative metagenome analysis – Lecture
      • Comparative metagenome analysis with MGnifyR – Practical
    • Technical Help sheet
    • Trainer biographies
    • Further learning
    • Your feedback