Overview
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Course content
Course introduction
Experimental considerations of metagenomics
Quality control and decontamination
- Quality control and decontamination – Lecture
- Quality control and decontamination -practical
Assembly and annotation
Binning and MAG generation
- Binning and MAG generation: lecture
- Binning and MAG generation: practical
The European Nucleotide Archive – ENA
- The European Nucleotide Archive – Lecture
- ENA Metagenomics Standards and MAG layer – Lecture
MGnify MAG resources
- MGnify MAG resources: lecture
- Programmatic access to MGnify resources with APIs and notebooks: practical
Strain resolution
- Strain resolution – Lecture
- Strain resolution – Practical
Comparative metagenome analysis
- Comparative metagenome analysis – Lecture
- Comparative metagenome analysis with MGnifyR – Practical
Technical Help sheet
Trainer biographies
Further learning
Your feedback

MGnify MAG resources

MGnify provides biome-specific catalogues of species representative Metagenome-Assembled Genomes (MAGs). In this session, we will cover how these catalogues are generated and explore the annotations available for their MAGs.

MGnify MAG resources: lecture
Programmatic access to MGnify resources with APIs and notebooks: practical

Proceed through this section to view materials from all these sessions or select a specific session from the above list to jump ahead.

Genome-resolved metagenomics bioinformatics

MGnify MAG resources