Overview
Search
Course content
Course introduction
Experimental considerations of metagenomics
Quality control and decontamination
- Quality control and decontamination – Lecture
- Quality control and decontamination -practical
Assembly and annotation
Binning and MAG generation
- Binning and MAG generation: lecture
- Binning and MAG generation: practical
The European Nucleotide Archive – ENA
- The European Nucleotide Archive – Lecture
- ENA Metagenomics Standards and MAG layer – Lecture
MGnify MAG resources
- MGnify MAG resources: lecture
- Programmatic access to MGnify resources with APIs and notebooks: practical
Strain resolution
- Strain resolution – Lecture
- Strain resolution – Practical
Comparative metagenome analysis
- Comparative metagenome analysis – Lecture
- Comparative metagenome analysis with MGnifyR – Practical
Technical Help sheet
Trainer biographies
Further learning
Your feedback

Experimental considerations of metagenomics

Overview: What are the consideration that you need to account for when you start a metagenomics experiment? Find out what some of these considerations are as we walk through this session.

Learning outcome

By the end of this lecture you will be able to:

Identify key aspects on the experimental design that have a greater influence on a metagenomics experiment

Materials: Presentation

Genome-resolved metagenomics bioinformatics

Experimental considerations of metagenomics