Genome bioinformatics: resequencing and variant calling, which ran in November 2022, provided a guide to the technology, analysis workflows, tools, and resources for next generation sequencing data analysis.

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Using these materials

These course materials provide a mixture of presentations and practicals to help advance your knowledge and skills in the analysis of biological data. You may select your topic of interest from the Course content page to view the relevant materials or work your way through all the course materials. 

To find out more about the trainers who created these materials, follow the links from the Course content page or go directly to the Trainer biographies page.

In the Further learning section you may explore the details about the EMBL-EBI’s free access online tutorials and webinars on a variety of life sciences topics.

If you would like to provide feedback on this set of course materials, please use the form on the Your feedback page.

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Course learning outcomes

After this course you should be able to:

• State the advantages and limitations of NGS technologies
• Apply appropriate QC and short read aligners to unassembled reads
• Perform variant calling analysis and annotation
• Scale-up and automate simple genomics pipelines
• Access genomic datasets from online public resources

Material collection editors

• Chiara Batini, University of Leicester
• Piv Gopalasingam, EMBL-EBI
• Raheleh Rahbari, Wellcome Sanger Institute

DOI: 10.6019/TOL.GenomeBioinformatics-t.2023.00001.1