{"id":17,"date":"2021-04-14T14:01:46","date_gmt":"2021-04-14T14:01:45","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/training\/materials\/template\/pre-course-challenges\/"},"modified":"2024-01-10T13:21:15","modified_gmt":"2024-01-10T13:21:15","slug":"open-data-software","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/materials\/emblopenscienceworkshop2022\/open-data-software\/","title":{"rendered":"Open data and open software"},"content":{"rendered":"\n<p><strong>Overview: <\/strong>In this session,  we will showcase how EMBL scientists work in accordance with open and FAIR principles along the data lifecycle. Trainers share concrete measures, resources and tools that help to handle data openly and FAIRly.<\/p>\n\n\n\n<p><strong>Data collection, processing and analysis<\/strong> &#8211;  Charles Girardot<\/p>\n\n\n\n<iframe loading=\"lazy\" src=\"https:\/\/embl-ebi.cloud.panopto.eu\/Panopto\/Pages\/Embed.aspx?id=475aaaae-f3ac-419a-b329-b0b400dfffb2&#038;autoplay=false&#038;offerviewer=true&#038;showtitle=true&#038;showbrand=true&#038;captions=false&#038;interactivity=all\" height=\"405\" width=\"720\" style=\"border: 1px solid #464646;\" allowfullscreen allow=\"autoplay\" aria-label=\"Panopto Embedded Video Player\"><\/iframe>\n\n\n\n<ul class=\"wp-block-list\">\n<li><a href=\"https:\/\/drive.google.com\/file\/d\/1s3WxPIvxXXOn5wuuC4-IMUZpycfeOER-\/view?usp=drive_link\">Presentation slides<\/a><\/li>\n<\/ul>\n\n\n\n<p><strong>Structured data<\/strong> &#8211; Sandra Orchard<\/p>\n\n\n\n<iframe loading=\"lazy\" src=\"https:\/\/embl-ebi.cloud.panopto.eu\/Panopto\/Pages\/Embed.aspx?id=2a4ffa5f-3c89-480c-9808-af3300904161&amp;autoplay=false&amp;offerviewer=true&amp;showtitle=true&amp;showbrand=true&amp;captions=false&amp;interactivity=all\" height=\"405\" width=\"720\" style=\"border: 1px solid #464646;\" allowfullscreen=\"\" allow=\"autoplay\"><\/iframe>\n\n\n\n<p><strong>Unstructured data<\/strong> &#8211; Ugis Sarkans<\/p>\n\n\n\n<iframe loading=\"lazy\" src=\"https:\/\/embl-ebi.cloud.panopto.eu\/Panopto\/Pages\/Embed.aspx?id=998c713e-1cd3-4b59-ab73-af0e00c4a08c&amp;autoplay=false&amp;offerviewer=true&amp;showtitle=true&amp;showbrand=true&amp;captions=false&amp;interactivity=all\" height=\"405\" width=\"720\" style=\"border: 1px solid #464646;\" allowfullscreen=\"\" allow=\"autoplay\"><\/iframe>\n\n\n\n<ul class=\"wp-block-list\">\n<li><a href=\"https:\/\/drive.google.com\/file\/d\/19J49IgqaLmGvWH7OisSIdIqkO_QtfeWn\/view?usp=sharing\">Presentation slides<\/a><br><\/li>\n<\/ul>\n\n\n\n<p><strong>Sensitive data<\/strong> &#8211; Mallory Freeberg<\/p>\n\n\n\n<iframe loading=\"lazy\" src=\"https:\/\/embl-ebi.cloud.panopto.eu\/Panopto\/Pages\/Embed.aspx?id=51c0f4bf-32e2-400d-8357-af08009adc6a&amp;autoplay=false&amp;offerviewer=true&amp;showtitle=true&amp;showbrand=true&amp;captions=false&amp;interactivity=all\" height=\"405\" width=\"720\" style=\"border: 1px solid #464646;\" allowfullscreen=\"\" allow=\"autoplay\"><\/iframe>\n\n\n\n<ul class=\"wp-block-list\">\n<li><a href=\"https:\/\/drive.google.com\/file\/d\/1vLeNXGIRnxb8nLem6LcZCNXbFfuDTS4w\/view?usp=sharing\" data-type=\"URL\" data-id=\"https:\/\/drive.google.com\/file\/d\/1vLeNXGIRnxb8nLem6LcZCNXbFfuDTS4w\/view?usp=sharing\">Presentation slides<\/a><\/li>\n<\/ul>\n\n\n\n<p><\/p>\n\n\n\n<p><strong>Open Sofware<\/strong> &#8211; Lisanna Paladin<\/p>\n\n\n\n<iframe loading=\"lazy\" src=\"https:\/\/embl-ebi.cloud.panopto.eu\/Panopto\/Pages\/Embed.aspx?id=6b5c751e-42e8-4205-b468-af0400bcd5e5&amp;autoplay=false&amp;offerviewer=true&amp;showtitle=true&amp;showbrand=true&amp;captions=false&amp;interactivity=all\" height=\"405\" width=\"720\" style=\"border: 1px solid #464646;\" allowfullscreen=\"\" allow=\"autoplay\"><\/iframe>\n\n\n\n<ul class=\"wp-block-list\">\n<li><a href=\"https:\/\/docs.google.com\/presentation\/d\/1-0ooX44y_PLk6YpUbPHqfJOjol2iTqEU\/edit?usp=sharing&amp;ouid=107001233493882804410&amp;rtpof=true&amp;sd=true\">Presentation slides<\/a><\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Overview: In this session, we will showcase how EMBL scientists work in accordance with open and FAIR principles along the data lifecycle. Trainers share concrete measures, resources and tools that help to handle data openly and FAIRly. Data collection, processing and analysis &#8211; Charles Girardot Structured data &#8211; Sandra Orchard Unstructured data &#8211; Ugis Sarkans&#8230;<\/p>\n","protected":false},"author":3,"featured_media":0,"parent":0,"menu_order":4,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-17","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/emblopenscienceworkshop2022\/wp-json\/wp\/v2\/pages\/17","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/emblopenscienceworkshop2022\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/emblopenscienceworkshop2022\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/emblopenscienceworkshop2022\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/emblopenscienceworkshop2022\/wp-json\/wp\/v2\/comments?post=17"}],"version-history":[{"count":27,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/emblopenscienceworkshop2022\/wp-json\/wp\/v2\/pages\/17\/revisions"}],"predecessor-version":[{"id":755,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/emblopenscienceworkshop2022\/wp-json\/wp\/v2\/pages\/17\/revisions\/755"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/emblopenscienceworkshop2022\/wp-json\/wp\/v2\/media?parent=17"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}