{"id":19,"date":"2021-04-14T14:01:45","date_gmt":"2021-04-14T14:01:45","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/training\/materials\/template\/slack\/"},"modified":"2026-03-06T12:06:38","modified_gmt":"2026-03-06T12:06:38","slug":"software","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/materials\/data-visualisation-for-biology-materials\/software\/","title":{"rendered":"Software"},"content":{"rendered":"\n<p class=\"wp-block-paragraph\">The following table provides a list of the software used during the course and information on where to obtain it or how to install it. <\/p>\n\n\n\n<p class=\"wp-block-paragraph\">The virtual machines used in this course ran on E1 Amazon instances (O.S. Ubuntu22.04). <\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Specs: 4 vCPU, 16 GB RAM, 300 GB Disk<\/p>\n\n\n\n<figure class=\"wp-block-table\"><table><tbody><tr><td><strong>Software<\/strong><\/td><td><strong>URL for software \/ version \/ installation<\/strong><\/td><\/tr><tr><td>R<\/td><td><a href=\"https:\/\/posit.co\/download\/rstudio-desktop\/\">https:\/\/posit.co\/download\/rstudio-desktop\/<\/a><\/td><\/tr><tr><td>RStudio<\/td><td><a href=\"https:\/\/posit.co\/products\/open-source\/rstudio\/\">https:\/\/posit.co\/products\/open-source\/rstudio\/<\/a><\/td><\/tr><tr><td>uv<\/td><td><a href=\"https:\/\/docs.astral.sh\/uv\/\">https:\/\/docs.astral.sh\/uv\/<\/a><\/td><\/tr><tr><td><\/td><td>Note: With uv installed, you should be able to do a <code>uv init<\/code> and <code>uv add pandas marimo<\/code><\/td><\/tr><tr><td>Chrome browser<\/td><td><a href=\"https:\/\/support.google.com\/chrome\/a\/answer\/9025903?hl=en\">https:\/\/support.google.com\/chrome\/a\/answer\/9025903?hl=en<\/a><\/td><\/tr><tr><td>Visual Studio Code<\/td><td><a href=\"https:\/\/code.visualstudio.com\/docs\/setup\/linux\">https:\/\/code.visualstudio.com\/docs\/setup\/linux<\/a><\/td><\/tr><\/tbody><\/table><\/figure>\n\n\n\n<p class=\"wp-block-paragraph\"><\/p>\n","protected":false},"excerpt":{"rendered":"<p>The following table provides a list of the software used during the course and information on where to obtain it or how to install it. The virtual machines used in this course ran on E1 Amazon instances (O.S. Ubuntu22.04). Specs: 4 vCPU, 16 GB RAM, 300 GB Disk Software URL for software \/ version \/&#8230;<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":1,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-19","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/data-visualisation-for-biology-materials\/wp-json\/wp\/v2\/pages\/19","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/data-visualisation-for-biology-materials\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/data-visualisation-for-biology-materials\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/data-visualisation-for-biology-materials\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/data-visualisation-for-biology-materials\/wp-json\/wp\/v2\/comments?post=19"}],"version-history":[{"count":13,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/data-visualisation-for-biology-materials\/wp-json\/wp\/v2\/pages\/19\/revisions"}],"predecessor-version":[{"id":1165,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/data-visualisation-for-biology-materials\/wp-json\/wp\/v2\/pages\/19\/revisions\/1165"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/data-visualisation-for-biology-materials\/wp-json\/wp\/v2\/media?parent=19"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}