{"id":417,"date":"2023-03-14T10:51:46","date_gmt":"2023-03-14T10:51:55","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/training\/materials\/template\/welcome\/"},"modified":"2023-10-30T08:44:05","modified_gmt":"2023-10-30T08:44:05","slug":"welcome","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/materials\/ccpbiosim-materials\/welcome\/","title":{"rendered":"Course content"},"content":{"rendered":"\n

To see details about the live CCPBioSim course and the original programme, you can refer to the course page and programme<\/a>.<\/p>\n\n\n\n

The contents table below outlines the different sessions that were included in the course, as well as the format of the materials (slides\/videos\/practicals) and each session\u2019s trainer. Either proceed through the materials using the arrows at the end of each page or pick your topic of interest from the table below to skip straight to it.<\/p>\n\n\n\n

\"\" Presentation slides \u2013  View or download the slides<\/p>\n\n\n\n

\"\" Practicals \u2013 View or download the slides, exercises, datasets, analysis scripts and results<\/p>\n\n\n\n

<\/p>\n\n\n

\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Format<\/strong><\/td>\nSubject<\/strong><\/td>\nTrainer<\/strong><\/td>\n<\/tr>\n
\u00a0<\/td>\nIntroduction to concepts in molecular biology, proteins, and variants<\/strong><\/a><\/td>\n\u00a0<\/td>\n<\/tr>\n
\"\"<\/td>\nGenetic variation in health and disease<\/a><\/td>\nFranca Fraternali<\/a><\/td>\n<\/tr>\n
\"\"\"\"<\/td>\nIntroduction to genes<\/a><\/td>\nAleena Mushtaq<\/a><\/td>\n<\/tr>\n
\"\"<\/td>\nGenomics resources for simulators<\/a><\/td>\nAleena Mushtaq, Dona Shaju, Timothe Cezard<\/a><\/td>\n<\/tr>\n
\"\"\"\"<\/td>\nFunctional prediction of variants using ProtVar<\/a><\/td>\nJames Stephenson<\/a><\/td>\n<\/tr>\n
\u00a0<\/td>\nProtein sequences, experimental and AI-predicted structures, and variant mapping resources<\/strong><\/a><\/td>\n\u00a0<\/td>\n<\/tr>\n
\"\"\"\"<\/td>\nProtein sequence resources<\/a><\/td>\nElena Speretta, Nadya Urakova<\/a><\/td>\n<\/tr>\n
\"\"\"\"<\/td>\nExperimental structure data, validation, and visualization<\/a><\/td>\nDavid Armstrong<\/a><\/td>\n<\/tr>\n
\"\"\"\"<\/td>\nExperimental structure analysis<\/a><\/td>\nDavid Armstrong<\/a><\/td>\n<\/tr>\n
\"\"<\/td>\nPredicted structure databases and validation<\/a><\/td>\nPaulyna Maga\u00f1a<\/a><\/td>\n<\/tr>\n
\"\"\"\"<\/td>\nGenerating predicted structures<\/a><\/td>\nPaulyna Maga\u00f1a<\/a><\/td>\n<\/tr>\n
\"\"<\/td>\nVariant mapping tools and databases<\/a><\/td>\nTimir Weston<\/a><\/td>\n<\/tr>\n
\u00a0<\/td>\nVariant effect prediction and Introductory Molecular Dynamics<\/strong><\/a><\/td>\n\u00a0<\/td>\n<\/tr>\n
\"\"\"\"<\/td>\nVariant effect prediction<\/a><\/td>\nAleena Mushtaq<\/a><\/td>\n<\/tr>\n
\"\"\"\"<\/td>\nIntroduction to molecular dynamics simulations<\/a><\/td>\nTimir Weston<\/a><\/td>\n<\/tr>\n
\"\"<\/td>\nMolecular dynamics simulation practical using Titin domains<\/a><\/td>\nTimir Weston, Maria Laura De Sciscio, Franca Fraternali and Oriol Gracia I Carmona<\/a><\/td>\n<\/tr>\n
\"\"\"\"<\/td>\nMolecular Dynamics simulations and Trajectory analysis<\/strong><\/a><\/td>\nTimir Weston, Maria Laura De Sciscio, Franca Fraternali and Oriol Gracia I Carmona<\/a><\/td>\n<\/tr>\n
\"\"<\/a><\/td>\nFurther learning<\/td>\n\u00a0<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/figure>\n\n\n

<\/p>\n","protected":false},"excerpt":{"rendered":"

To see details about the live CCPBioSim course and the original programme, you can refer to the course page and programme. The contents table below outlines the different sessions that were included in the course, as well as the format of the materials (slides\/videos\/practicals) and each session\u2019s trainer. Either proceed through the materials using the arrows…<\/p>\n","protected":false},"author":4,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-417","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/ccpbiosim-materials\/wp-json\/wp\/v2\/pages\/417","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/ccpbiosim-materials\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/ccpbiosim-materials\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/ccpbiosim-materials\/wp-json\/wp\/v2\/users\/4"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/ccpbiosim-materials\/wp-json\/wp\/v2\/comments?post=417"}],"version-history":[{"count":23,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/ccpbiosim-materials\/wp-json\/wp\/v2\/pages\/417\/revisions"}],"predecessor-version":[{"id":1085,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/ccpbiosim-materials\/wp-json\/wp\/v2\/pages\/417\/revisions\/1085"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/ccpbiosim-materials\/wp-json\/wp\/v2\/media?parent=417"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}