{"id":2,"date":"2021-04-14T12:01:46","date_gmt":"2021-04-14T12:01:41","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/training\/materials\/template\/?page_id=2"},"modified":"2024-07-15T14:10:46","modified_gmt":"2024-07-15T14:10:46","slug":"course-content","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/materials\/bioinformatics-immunologists-materials\/course-content\/","title":{"rendered":"Course Content"},"content":{"rendered":"\n

These materials were part of the live \u2018Bioinformatics for Immunologists\u2019 Course which happened in July 2024. Please refer to the course page and programme<\/a> to check details about this live event and the original programme.<\/p>\n\n\n\n

The content table below outlines the different sessions that were included in the course, as well as the format of the materials (slides\/videos\/practicals) and each session\u2019s trainer. Either proceed through the materials using the arrows at the end of each page or pick your topic of interest from the table below to skip straight to it.<\/p>\n\n\n\n

\"\" Presentation slides \u2013  View or download the slides<\/p>\n\n\n\n

\"\" Recorded lectures \u2013 Watch the lecture videos <\/p>\n\n\n\n

\"\" Practicals \u2013 View or download the slides, exercises, datasets, analysis scripts and results<\/p>\n\n\n\n

Format<\/strong><\/td>Subject<\/strong><\/td>Trainer<\/strong><\/td><\/tr>
<\/td>Introduction to computational skills for data analysis<\/a><\/strong><\/td><\/td><\/tr>
\"\"\"\"<\/td>Introduction to working with UNIX and bash shell<\/td>Jiawei Wang<\/a><\/td><\/tr>
\"\"\"\"<\/td>Introduction to R programming<\/td>Jiawei Wang<\/a><\/td><\/tr>
\"\"\"\"<\/td>Data visualisation and plotting using ggplot2<\/td>Jiawei Wang<\/a><\/td><\/tr>
\"\"\"\"<\/td>Organising your work with R projects and version control (Git)<\/td>Jiawei Wang<\/a><\/td><\/tr>
<\/td>RNA sequencing<\/a><\/strong><\/td><\/td><\/tr>
\"\"\"\"<\/td>Bulk RNA-seq analysis<\/td>Teng Heng<\/a> and Anna Lorenc <\/a><\/td><\/tr>
\"\"\"\"<\/td>Single-cell RNA seq analysis<\/td>Katarzyna Kania<\/a> and Jiawei Wang<\/a><\/td><\/tr>
\"\"\"\"<\/td>B\/T cell receptor analysis<\/td>Anna Lorenc<\/a> and Wanseon Lee<\/a><\/td><\/tr>
<\/td>Flow cytometry<\/a><\/strong><\/td><\/td><\/tr>
\"\"\"\"<\/td>Introduction to flow cytometry and its applications<\/td>Christopher Hall<\/a><\/td><\/tr>
\"\"\"\"<\/td>Flow cytometry data analysis<\/td>Katrien Quintelier<\/a> and Yvan Saeys<\/a><\/td><\/tr>
<\/td>Data resources for immunology research<\/a><\/strong><\/td><\/td><\/tr>
\"\"\"\"<\/td>Expression Atlas and Single cell Expression Atlas<\/td>Liora Vilmovsky<\/a><\/td><\/tr>
\"\"\"\"<\/td>Ensembl regulation<\/td>
Louisse Mirabueno<\/a><\/td><\/tr>
\"\"\"\"<\/td>IntAct<\/td>Kalpana Panneerselvam\u00a0<\/a><\/td><\/tr>
\"\"\"\"<\/td>Reactome<\/td>Krishna Tiwari<\/a><\/td><\/tr><\/tbody><\/table><\/figure>\n","protected":false},"excerpt":{"rendered":"

These materials were part of the live \u2018Bioinformatics for Immunologists\u2019 Course which happened in July 2024. Please refer to the course page and programme to check details about this live event and the original programme. The content table below outlines the different sessions that were included in the course, as well as the format of the materials…<\/p>\n","protected":false},"author":2,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"open","template":"","meta":{"footnotes":""},"class_list":["post-2","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/bioinformatics-immunologists-materials\/wp-json\/wp\/v2\/pages\/2","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/bioinformatics-immunologists-materials\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/bioinformatics-immunologists-materials\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/bioinformatics-immunologists-materials\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/bioinformatics-immunologists-materials\/wp-json\/wp\/v2\/comments?post=2"}],"version-history":[{"count":24,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/bioinformatics-immunologists-materials\/wp-json\/wp\/v2\/pages\/2\/revisions"}],"predecessor-version":[{"id":1675,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/bioinformatics-immunologists-materials\/wp-json\/wp\/v2\/pages\/2\/revisions\/1675"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/bioinformatics-immunologists-materials\/wp-json\/wp\/v2\/media?parent=2"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}