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Bioinformatics for immunologists

  • Overview
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  • Course Content
  • Computational skills for data analysis
    • Introduction to working with UNIX and bash shell
    • Introduction to R programming
    • Intro to data visualisation and plotting using ggplot2
    • Organising your work with R projects and version control (Git)
  • RNA sequencing
    • Bulk RNA-seq analysis
    • Single-cell RNA seq analysis
    • B/T cell receptor analysis
  • Flow Cytometry
    • Introduction to flow cytometry and its applications
    • Flow cytometry data analysis
  • Data resources for immunological research
    • Expression Atlas and Single cell Expression Atlas
    • Ensembl regulation
    • Protein interactions
    • Tools for pathway analysis – Reactome
  • Trainer biographies
  • Further learning
  • Technical Help sheet
  • Your feedback

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Computational skills for data analysis

This section will introduce the computational skill needed to work on the data analysis in this set of materials. It contains lectures and practicals on:

  • Introduction to working with UNIX and bash shell
  • Introduction to R programming
  • Data visualisation and plotting using ggplot2
  • Organising your work with R projects and version control (Git)
  • page navigation-left-circle-1_1 Course Content
  • pageIntroduction to working with UNIX and bash shell navigation-right-circle-1_1