Command line for data filtering

Trainer: Ian Sealy

Overview: This session looks at some simple command line tools – like cut, column, sort, grep and awk – that allow you to quickly and flexibly filter and query your RNA-seq data.

Learning outcomes:

By the end of this session you will be able to:

  • List command that can be used to process RNA-seq data
  • Apply basic command line tools to filter and query RNA-seq data

Materials:

Check the Help sheet page to find out the software requirements for this practical.