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Bioinformatics approaches to viruses

  • Overview
  • Search
  • Course Content
  • Approaches to virus sequencing — COVID et al.
  • Sequence retrieval and quality control
    • COVID-19 data portal
    • Sequence retrieval with ENA
    • Sequence quality control
  • Assembly and comparative analysis
    • Assembly and comparative analysis of viral genomes
    • Comparative analysis — Case studies
  • Phylogenomics and genome surveillance
    • Introduction to phylogenomics methods
    • Phylogenomics methods – discrete phylogeography
    • Nextstrain resource
    • Metaviromics
  • Public health and Policy
  • Technical help sheet
  • Trainer biographies
  • Further learning
  • Your feedback

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Course Content

FormatSubjectTrainer
Approaches to virus sequencing — COVID et al! Michael Quail
Sequence retrieval and quality control
EMBL-EBI COVID-19 data portalZahra Waheed
Sequence retrieval with European Nucleotide Archive (ENA)Naira Ihsan
Sequence quality controlGabriel Wallau
Assembly and comparative analysis
Assembly and comparative analysis of viral genomesGabriel Wallau and Filipe Dezordi
Comparative analysis — case studiesGabriel Wallau and Filipe Dezordi
Phylogenomics and genome surveillance
Introduction to phylogenomicsNídia Trovão
Practical phylogenomics methodsJames Otieno
Nextstrain resourcePedro E. Romero
MetaviromicsJuan Sebastian Andrade Martinez
Public health and policyDaniel Vincent Thomas Lopez