Course at EMBL-EBI
Systems biology: from large datasets to biological insight
2026
This course covers the use of computational tools to extract biological insight from omics datasets. The content will explore a range of approaches – from network inference and data integration to machine learning and logic modelling – that can be used to extract biological insights from varied data types. Together these techniques will provide participants with a useful toolkit for designing new strategies to extract relevant information and understanding from large-scale biological data.
This course is currently under development, please check back again soon for further details. You can find more information about the previous iteration of this course here.
Who is this course for?
This course is aimed at advanced PhD students, post-doctoral researchers, and non-academic scientists who are currently working with large-scale omics datasets with the aim of discerning biological function and processes. Ideal applicants should already have some experience (ideally one to two years) working with systems biology or related large-scale (multi-)omics data analyses.
Trainers
Simon Andrews
Babraham Institute Aurelien Dugourd
EMBL-EBI Federica Eduati
Eindhoven University of Technology Florin Cornelius Walter
EMBL Heidelberg
Programme
All times in the programme are listed in BST. This program is subject to minor changes.
Time
Topic
Trainer
Day one – Monday 11 May 2026
10:15 — 10:30
Arrival and registration
10:30 — 11:00
Introduction to the course and EMBL-EBI
Lizzie Divala
11:00 — 11:15
Break
11:15 — 12:00
Keynote lecture - Metabolic networks
Kiran Raosaheb Patil
12:00 — 13:00
Machine learning approaches to systems biology
Simon Andrews, Hayley Carr
13:00 — 14:00
Lunch break
14:00 — 16:00
Machine learning approaches to systems biology
Simon Andrews, Hayley Carr
16:00 — 16:30
Coffee break
16:30 — 17:30
Flash talks I
17:30 — 18:30
Accommodation check-in
18:30
Dinner at Hinxton Hall
Day two – Tuesday 12 May 2026
09:30 — 10:30
Deep learning
Anurag Limdi 10:30 — 11:00
Coffee break
11:00 — 13:00
Deep learning
Anurag Limdi
13:00 — 14:00
Lunch break
14:00 — 15:30
Phenotype-specific network construction
Benji Maier
15:30 — 16:00
Coffee break
16:00 — 16:45
Phenotype-specific network construction
Benji Maier
16:45 — 17:30
Flash talks II
17:30 — 19:30
Poster session I (with dinner)
Day three – Wednesday 13 May 2026
09:30 — 10:30
Network propagation
Thodoris Koutsanderas
10:30 — 11:00
Coffee break
11:00 — 12:30
Network propagation
Thodoris Koutsanderas
12:30 — 13:30
Lunch break
13:30 — 15:00
Cell-cell communication
Elias Farr
15:00 — 15:30
Coffee break
15:30 — 17:00
Cell-cell communication
Elias Farr
17:00 — 19:00
Poster session II (with dinner)
Day four – Thursday 14 May 2026
09:00 — 11:00
Multi-omics data integration with prior knowledge to decipher signaling and metabolic deregulation in complex diseases with COSMOS
Aurelien Dugourd
11:00 — 11:30
Coffee break
11:30 — 12:30
Multi-omics data integration with prior knowledge to decipher signaling and metabolic deregulation in complex diseases with COSMOS
Aurelien Dugourd
12:30 — 13:30
Lunch break
13:30 — 15:30
Data integration using MOFA
Florin Walter
15:30 — 16:00
Coffee break
16:00 — 17:00
Data integration using MOFA
Florin Walter
18:00
Dinner
Day five – Friday 15 May 2026
09:00 — 11:00
Keynote lecture
Federica Eduati
11:00 — 11:30
Coffee break
11:30 — 12:30
From omics data to networks to mechanistic models
Bi-rong Wang
12:30 — 13:30
Lunch break
13:30 — 14:15
From omics data to networks to mechanistic models
Bi-rong Wang
14:15 — 15:15
Wrap-up and feedback
Lizzie Divala
15:15
End of course
15:30
Bus to train station
Please read our support page before starting your application. To be considered for a place on this course, you must do the following:
- Complete the online application form.
- Ensure you add relevant information to the ‘submission details’ section where you are asked to provide information on your:
- pre-requisite skills and knowledge
- current work and course expectations
- data availability
- Upload one letter of support from your supervisor or a senior colleague detailing reasons why you should be selected for the course.
Please submit all documents during the application process by 23:59 GMT on 25 January 2026. Items marked * in the application are mandatory. Incomplete applications will not be processed.
All applicants will be informed of the status of their application (successful, waiting list, unsuccessful) by 09 February 2026. If you have any questions regarding the application process, please contact Omotoke Labiyi .
Posters
All participants are expected to present a poster, and successful applicants will be asked to submit their poster upon registration. We expect the posters to act as a talking point between you, other participants, and the trainers on the course. They should give the reader an idea of the work you are engaged in, what you are planning to do next, and anything of interest that might be useful for sharing with the gathered participants.
Registration fees
The registration fee includes:
- access to the full five-day course programme
- access to a bespoke online course handbook
- secure community space on Slack
- secure virtual machine to work on that is accessed via the internet
- dedicated online support team
- certificate on completion of the course
The registration fee includes:
- Catering as detailed on the course programme
- Accommodation for four nights (11, 12, 13, and 14 May 2026)
- Bespoke course handbook with links to all course materials
- Use of a computer in the EMBL-EBI training suite throughout the course
- Secure virtual machines for the practical sessions listed in the programme
- Shuttle bus on the final course day to Cambridge train station
Academia
£925.00
Industry*
£1,225.00
* If your company is an EMBL-EBI Industry Programme Member, discounts may be available. This will apply automatically on registration if applicable; alternatively, please contact your event organiser for more information.
Financial assistance
Financial assistance is available to a limited number of participants attending this course.
Registration fee waivers
A limited number of registration fee waivers are offered for this course.
- Application process:
- Apply for the fee waiver alongside your course application.
- Provide a brief explanation of why you require the waiver and how attending the course will benefit your career.
- Notification:
- You will be informed of your waiver status at the same time as the outcome of your course application.
- If awarded, the registration fee will be waived entirely.
Travel grants
A limited number of travel grants of up to £1,000.00 are available to support participants' travel expenses.
- Covered expenses:
- Airfare, train, bus, taxi, and visa costs.
- Application process:
- Apply for the travel grant when submitting your course application.
- You will be informed of the grant decision, including the amount awarded, along with your course application outcome.
- Reimbursement process:
- Participants must pay upfront for their travel costs.
- A reimbursement form will be provided upon course completion.
- Submit the completed form with receipts within one month of travel completion.
- Grant adjustment:
- The organisers may adjust the grant amount to accommodate more participants.
Financial assistance terms and conditions
- Selection process: Recipients of financial assistance will be selected by the scientific organisers during the course application review.
- Selection criteria:
- Selection is based on scientific merit, your current work or study location, the need for financial support, and the career impact of attending the course.
- Priority will be given to applicants from Low- and Middle-Income Countries (LMICs).
- Fair consideration: Applying for financial assistance will not impact the outcome of your course application.
Travel information
Electronic Travel Authorisations (ETAs) are needed for visitors to the UK who do not currently need a visa for short stays, or who do not already have a UK immigration status. Full details and information on how to apply can be found at the UK Gov website.
Event terms and conditions
- Selection process: Recipients will be selected by the scientific organisers during the course application review.
- Selection criteria:
- Selection is based on scientific merit, your current work or study location, the need for financial support, and the career impact of attending the course.
- Priority will be given to applicants from Low- and Middle-Income Countries (LMICs).
- Fair consideration: Applying for financial assistance will not affect your course application outcome.
Course materials
The materials for the 2025 course are available for you to browse. These provide a snapshot of the content that will be covered in the 2026 course.
Babraham Institute
EMBL-EBI
Eindhoven University of Technology
EMBL Heidelberg
Programme
All times in the programme are listed in BST. This program is subject to minor changes.
Time | Topic | Trainer |
Day one – Monday 11 May 2026 | ||
10:15 — 10:30 | Arrival and registration | |
10:30 — 11:00 | Introduction to the course and EMBL-EBI | Lizzie Divala |
11:00 — 11:15 | Break | |
11:15 — 12:00 | Keynote lecture - Metabolic networks | Kiran Raosaheb Patil |
12:00 — 13:00 | Machine learning approaches to systems biology | Simon Andrews, Hayley Carr |
13:00 — 14:00 | Lunch break | |
14:00 — 16:00 | Machine learning approaches to systems biology | Simon Andrews, Hayley Carr |
16:00 — 16:30 | Coffee break | |
16:30 — 17:30 | Flash talks I | |
17:30 — 18:30 | Accommodation check-in | |
18:30 | Dinner at Hinxton Hall | |
Day two – Tuesday 12 May 2026 | ||
09:30 — 10:30 | Deep learning | Anurag Limdi |
10:30 — 11:00 | Coffee break | |
11:00 — 13:00 | Deep learning | Anurag Limdi |
13:00 — 14:00 | Lunch break | |
14:00 — 15:30 | Phenotype-specific network construction | Benji Maier |
15:30 — 16:00 | Coffee break | |
16:00 — 16:45 | Phenotype-specific network construction | Benji Maier |
16:45 — 17:30 | Flash talks II | |
17:30 — 19:30 | Poster session I (with dinner) | |
Day three – Wednesday 13 May 2026 | ||
09:30 — 10:30 | Network propagation | Thodoris Koutsanderas |
10:30 — 11:00 | Coffee break | |
11:00 — 12:30 | Network propagation | Thodoris Koutsanderas |
12:30 — 13:30 | Lunch break | |
13:30 — 15:00 | Cell-cell communication | Elias Farr |
15:00 — 15:30 | Coffee break | |
15:30 — 17:00 | Cell-cell communication | Elias Farr |
17:00 — 19:00 | Poster session II (with dinner) | |
Day four – Thursday 14 May 2026 | ||
09:00 — 11:00 | Multi-omics data integration with prior knowledge to decipher signaling and metabolic deregulation in complex diseases with COSMOS | Aurelien Dugourd |
11:00 — 11:30 | Coffee break | |
11:30 — 12:30 | Multi-omics data integration with prior knowledge to decipher signaling and metabolic deregulation in complex diseases with COSMOS | Aurelien Dugourd |
12:30 — 13:30 | Lunch break | |
13:30 — 15:30 | Data integration using MOFA | Florin Walter |
15:30 — 16:00 | Coffee break | |
16:00 — 17:00 | Data integration using MOFA | Florin Walter |
18:00 | Dinner | |
Day five – Friday 15 May 2026 | ||
09:00 — 11:00 | Keynote lecture | Federica Eduati |
11:00 — 11:30 | Coffee break | |
11:30 — 12:30 | From omics data to networks to mechanistic models | Bi-rong Wang |
12:30 — 13:30 | Lunch break | |
13:30 — 14:15 | From omics data to networks to mechanistic models | Bi-rong Wang |
14:15 — 15:15 | Wrap-up and feedback | Lizzie Divala |
15:15 | End of course | |
15:30 | Bus to train station | |
Please read our support page before starting your application. To be considered for a place on this course, you must do the following:
- Complete the online application form.
- Ensure you add relevant information to the ‘submission details’ section where you are asked to provide information on your:
- pre-requisite skills and knowledge
- current work and course expectations
- data availability
- Upload one letter of support from your supervisor or a senior colleague detailing reasons why you should be selected for the course.
Please submit all documents during the application process by 23:59 GMT on 25 January 2026. Items marked * in the application are mandatory. Incomplete applications will not be processed.
All applicants will be informed of the status of their application (successful, waiting list, unsuccessful) by 09 February 2026. If you have any questions regarding the application process, please contact Omotoke Labiyi .
Posters
All participants are expected to present a poster, and successful applicants will be asked to submit their poster upon registration. We expect the posters to act as a talking point between you, other participants, and the trainers on the course. They should give the reader an idea of the work you are engaged in, what you are planning to do next, and anything of interest that might be useful for sharing with the gathered participants.
Registration fees
The registration fee includes:
- access to the full five-day course programme
- access to a bespoke online course handbook
- secure community space on Slack
- secure virtual machine to work on that is accessed via the internet
- dedicated online support team
- certificate on completion of the course
The registration fee includes:
- Catering as detailed on the course programme
- Accommodation for four nights (11, 12, 13, and 14 May 2026)
- Bespoke course handbook with links to all course materials
- Use of a computer in the EMBL-EBI training suite throughout the course
- Secure virtual machines for the practical sessions listed in the programme
- Shuttle bus on the final course day to Cambridge train station
Academia | £925.00 |
Industry* | £1,225.00 |
* If your company is an EMBL-EBI Industry Programme Member, discounts may be available. This will apply automatically on registration if applicable; alternatively, please contact your event organiser for more information.
Financial assistance
Financial assistance is available to a limited number of participants attending this course.
Registration fee waivers
A limited number of registration fee waivers are offered for this course.
- Application process:
- Apply for the fee waiver alongside your course application.
- Provide a brief explanation of why you require the waiver and how attending the course will benefit your career.
- Notification:
- You will be informed of your waiver status at the same time as the outcome of your course application.
- If awarded, the registration fee will be waived entirely.
Travel grants
A limited number of travel grants of up to £1,000.00 are available to support participants' travel expenses.
- Covered expenses:
- Airfare, train, bus, taxi, and visa costs.
- Application process:
- Apply for the travel grant when submitting your course application.
- You will be informed of the grant decision, including the amount awarded, along with your course application outcome.
- Reimbursement process:
- Participants must pay upfront for their travel costs.
- A reimbursement form will be provided upon course completion.
- Submit the completed form with receipts within one month of travel completion.
- Grant adjustment:
- The organisers may adjust the grant amount to accommodate more participants.
Financial assistance terms and conditions
- Selection process: Recipients of financial assistance will be selected by the scientific organisers during the course application review.
- Selection criteria:
- Selection is based on scientific merit, your current work or study location, the need for financial support, and the career impact of attending the course.
- Priority will be given to applicants from Low- and Middle-Income Countries (LMICs).
- Fair consideration: Applying for financial assistance will not impact the outcome of your course application.
Travel information
Electronic Travel Authorisations (ETAs) are needed for visitors to the UK who do not currently need a visa for short stays, or who do not already have a UK immigration status. Full details and information on how to apply can be found at the UK Gov website.
Event terms and conditions
- Selection process: Recipients will be selected by the scientific organisers during the course application review.
- Selection criteria:
- Selection is based on scientific merit, your current work or study location, the need for financial support, and the career impact of attending the course.
- Priority will be given to applicants from Low- and Middle-Income Countries (LMICs).
- Fair consideration: Applying for financial assistance will not affect your course application outcome.
Course materials
The materials for the 2025 course are available for you to browse. These provide a snapshot of the content that will be covered in the 2026 course.