Virtual course
Using fish models to explore the impact of Gene by Environment (GxE) 2022
This workshop is intended to present some aspects of Medaka fish research to the wider fish models community. We have several projects supported by two key grants that make use of Medaka’s high tolerance of inbreeding to perform gene by environment research across the Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel. The workshop will run in a virtual format including a mixture of formal research talks, lightning talks by students and post-docs, and social activities aimed to increase awareness and collaboration across the model fish community. Through these two days of discussions, we aim to present details and foster collaborative links on the use of key resources, such as the MIKK panel, for gene by environment projects in the community.
Virtual workshop
Participants will attend virtual formal presentations, and lightning talks from students and post-docs, followed by moderated Q&A sessions. Practical experience and workshop-style sessions will be intermixed with virtual social events via GatherTown. Live sessions will be delivered using Zoom with additional support and asynchronous communication via Slack.
Participants will need to be available between the hours of 09:00 – 17:30 BST each day of the workshop. Moderators will be available to assist, answer questions, and provide further explanations during these times.
Who is this course for?
Scientific researchers with experience in using fish models for genetic and phenotypic analysis with an interest in Gene by Environment (GxE) effects.
Trainers
Satoshi Ansai
Tohoku University Ewan Birney
EMBL-EBI Matthias Carl
University of Trento Fanny Defranoux
EMBL-EBI Tomas Fitzgerald
EMBL-EBI Marcio Soares Ferreira
EMBL-EBI Jed Goldstone
Woods Hole Oceanographic Institution Melissa Gronske
North Carolina State University Julia Hagauer
Max Planck Institute for Biology Felicity Jones
Max Planck Institute for Biology Seth Kullman
North Carolina State University Felix Loosli
Karlsruhe Institute of Technology Saul Pierotti
EMBL-EBI Mirana Ramialison
Murdoch Children's Research Institute Morgan Ritter
North Carolina State University Risa Suzuki
Heidelberg University Hideaki Takeuchi
Tohoku University Thomas Thumberger
Heidelberg University Philip Watson
Heidelberg University Bettina Welz
Heidelberg University Joachim Wittbrodt
Heidelberg University Bing Xie
EMBL-EBI
Programme
All times listed are in BST.
Time
Topic
Speaker
Day one – Monday 17 October 2022
09:00 – 10:15
Formal talks and Q&A
Chaired by Tomas Fitzgerald
Mirana Ramialison
Hideaki Takeuchi
10:15 – 11:15
Lightning talks and Q&A
Chaired by Fanny Defranoux
Saul Pierotti, Morgan Ritter, Thomas Thumberger, Bettina Welz, and Bing Xie
11:15 – 11:45
Coffee break
11:45 – 12:30
Formal talk and Q&A (20 mins + 10 min Q&A)
Chaired by Felix Loosli
Satoshi Ansai
12:30 – 14:00
Lunch
14:00 – 15:00
Poster session and lightning talks
Gathertown
15:00 – 15:30
Coffee break
15:30 – 16:30
Workshop session one: resources available for GxE research
Led by Ewan Birney, Tomas Fitzgerald, and Jed Goldstone
16:30 – 17:00
Coffee break
17:00 – 17:50
Formal talks and Q&A
Chaired by Philip Watson
Melissa Gronske
Jed Goldstone
17:50 – 18:00
End of day one summary
Ewan Birney
Time
Topic
Speaker
Day two – Tuesday 18 October 2022
09:00 – 10:15
Chair: Saul
Formal talks and Q&A
Chaired by Saul Pierotti
Felicity Jones
Felix Loosli
10:15 – 11:15
Chair: Jochen
Workshop session two: the MIKK Panel resource – phenotyping assay developments
Led by Felix Loosli, Jochen, and Seth
11:15 – 11:45
Coffee break
11:45 – 12:30
Formal talk (20 mins + 10 min Q&A)
Chaired by Thomas Thumberger
Matthias Carl
12:30 – 14:00
Lunch
14:00 – 15:00
Networking session
Gathertown
15:00 – 15:30
Coffee break
15:30 – 16:30
Lightning talks and Q&A
Chaired by Bettina Welz
Fanny Defranoux, Marcio Ferreira, Julia Hagauer, Risa Suzuki, and Philip Watson
16:30 – 17:00
Workshop close and summary
Ewan Birney
Please note the programme is subject to change at any time.
This workshop, hosted live on Zoom Webinar, is free to attend, but you need to register for a place beforehand, using the 'Register' button. Once registered, you will receive further joining information and access to the workshop handbook no later than two weeks before the workshop.
Tohoku University
EMBL-EBI
University of Trento
EMBL-EBI
EMBL-EBI
EMBL-EBI
Woods Hole Oceanographic Institution
North Carolina State University
Max Planck Institute for Biology
Max Planck Institute for Biology
North Carolina State University
Karlsruhe Institute of Technology
EMBL-EBI
Murdoch Children's Research Institute
North Carolina State University
Heidelberg University
Tohoku University
Heidelberg University
Heidelberg University
Heidelberg University
Heidelberg University
EMBL-EBI
Programme
All times listed are in BST.
|
Time |
Topic |
Speaker |
|
Day one – Monday 17 October 2022 |
||
|
09:00 – 10:15 |
Formal talks and Q&A |
Chaired by Tomas Fitzgerald Mirana Ramialison |
|
10:15 – 11:15 |
Lightning talks and Q&A |
Chaired by Fanny Defranoux Saul Pierotti, Morgan Ritter, Thomas Thumberger, Bettina Welz, and Bing Xie |
|
11:15 – 11:45 |
Coffee break |
|
|
11:45 – 12:30 |
Formal talk and Q&A (20 mins + 10 min Q&A) |
Chaired by Felix Loosli Satoshi Ansai |
|
12:30 – 14:00 |
Lunch |
|
|
14:00 – 15:00 |
Poster session and lightning talks |
Gathertown |
|
15:00 – 15:30 |
Coffee break |
|
|
15:30 – 16:30 |
Workshop session one: resources available for GxE research |
Led by Ewan Birney, Tomas Fitzgerald, and Jed Goldstone |
|
16:30 – 17:00 |
Coffee break |
|
|
17:00 – 17:50 |
Formal talks and Q&A |
Chaired by Philip Watson Melissa Gronske |
|
17:50 – 18:00 |
End of day one summary |
Ewan Birney |
|
Time |
Topic |
Speaker |
|
Day two – Tuesday 18 October 2022 |
||
|
09:00 – 10:15 Chair: Saul |
Formal talks and Q&A |
Chaired by Saul Pierotti Felicity Jones |
|
10:15 – 11:15 Chair: Jochen |
Workshop session two: the MIKK Panel resource – phenotyping assay developments |
Led by Felix Loosli, Jochen, and Seth |
|
11:15 – 11:45 |
Coffee break |
|
|
11:45 – 12:30 |
Formal talk (20 mins + 10 min Q&A) |
Chaired by Thomas Thumberger Matthias Carl |
|
12:30 – 14:00 |
Lunch |
|
|
14:00 – 15:00 |
Networking session |
Gathertown |
|
15:00 – 15:30 |
Coffee break |
|
|
15:30 – 16:30 |
Lightning talks and Q&A |
Chaired by Bettina Welz Fanny Defranoux, Marcio Ferreira, Julia Hagauer, Risa Suzuki, and Philip Watson |
|
16:30 – 17:00 |
Workshop close and summary |
Ewan Birney |
Please note the programme is subject to change at any time.
This workshop, hosted live on Zoom Webinar, is free to attend, but you need to register for a place beforehand, using the 'Register' button. Once registered, you will receive further joining information and access to the workshop handbook no later than two weeks before the workshop.