Virtual course
Managing a bioinformatics core facility
This knowledge exchange workshop is an opportunity for managers of bioinformatics core facilities to learn from EMBL-EBI’s service teams, and from each other. These facilities play an essential role in enabling research in the molecular life sciences. The landscape is constantly evolving as new research tools emerge, as experiments become increasingly data intensive, and as their clients – experimental researchers – become more exposed to the power of data-driven biology.
This course will allow participants to share experiences, discuss challenges and solutions that they face, and plan ways to cope with the ever changing demands raised by the molecular life science field. It will include sessions to learn from data providers at EMBL-EBI, hear how others have tackled common problems, and work together to design core services.
Who is this course for?
This workshop is aimed at new and experienced managers of bioinformatics core facilities, or other facilities that support their users to analyse and interpret large biomolecular data sets. This course will not provide a platform for teaching hands-on bioinformatics analysis.
What will I learn?
Learning outcomes
After this course you should be able to:
- Identify the strengths and limitations of your core facility
- Apply a framework for designing new services (including training your users) or redesigning existing services
- Appreciate different cost models, their pros and cons, and how to apply them in the context of your core facility
- Advise your users on how to manage sensitive data and where to submit them
Course content
During this course you will learn about:
- The role of core bioinformatics facilities
- How to design and resource your service
- Introduction to project management
Trainers
EMBL-EBI
EMBL-EBI
EMBL-EBI
EMBL-EBI
EMBL-EBI
EMBL-EBI
EMBL-EBI
Partners HealthCare of Massachusetts General and Brigham and Women’s Hospitals
Programme
Further to the below, we will be holding a follow-up day for all participants of the course on Thursday 16 February 2023. All timings are in GMT.
Time | Subject | Trainer | |
Day one - Wednesday 23 November 2022 |
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08:45 - 09:00 | Virtual arrivals | ||
09:00 - 09:30 | Course introduction and introduction to EMBL-EBI | Cath Brooksbank | |
09:30 - 10:20 | Brief introductions, participant challenges, and expectations | Cath Brooksbank and Matthew Hartley | |
10:20 - 10:40 | Break | ||
10:40 - 11:15 | Flash talks | All participants | |
11:15 - 11:25 | Break | ||
11:25 - 12:25 | Keynote lecture: The evolving role of bioinformatics core facilities | Sarah Butcher | |
12:25 - 13:25 | Lunch break | ||
13:25 - 14:30 | Spectrum exercise | Patricia Carvajal-López and Vera Matser | |
14:30 - 14:40 | Break | ||
14:40 - 15:40 | Core facilities community building with ISMB core group | TBA | |
Day two - Thursday 24 November 2022 |
|||
08:45 - 09:00 | Introduction to day two | ||
09:00 - 09:45 | The F words: Funding and finances | Sarah Butcher | |
09:45 - 10:00 | Break | ||
10:00 - 11:45 | Resourcing your service: People and compute | Sarah Butcher | |
11:45 - 12:00 | Break | ||
12:00 - 13:20 | Resourcing your service: Cost model exercise | Sarah Butcher | |
13:20 - 14:20 | Lunch break | ||
14:20 - 15:30 | Resourcing your service: Short talk and grant-costing exercise | Sarah Butcher | |
15:30 - 16:30 | Keynote lecture | TBA | |
Day three - Friday 25 November 2022 |
|||
08:45 - 09:00 | Introduction to day three | ||
09:00 - 10:00 |
(re)Designing your service - part one - the design process |
Nikiforos Karamanis and Vera Matser | |
10:00 - 10:10 | Break | ||
10:10 - 11:40 | (re)Designing your service - part two - understanding users | Nikiforos Karamanis and Vera Matser | |
11:40 - 11:50 | Break | ||
11:50 - 12:50 | Project management - approaches and tools | TBA | |
12:50 - 13:50 | Lunch break | ||
13:50 - 14:00 | Group photo | ||
14:00 - 15:00 | Collaboration and networking session | Cath Brooksbank and Sarah Morgan | |
15:00 - 15:30 | Revisit challenges and expectations | Cath Brooksbank | |
15:30 - 16:00 | Workshop wrap up, feedback, and additional resources | Cath Brooksbank |
Programme may be subject to changes before registration.
Please read our page on application advice before starting your application. In order to be considered for a place on this course, you must do the following:
- Complete the online application form.
- Ensure you add relevant information to the application form where you are asked to provide details on:
- scientific biography
- work history
- current research interests
- Upload a letter of support from your supervisor or a senior colleague detailing reasons why you should be selected for the course.
Please submit all documents during the application process by midnight on 28 September. Items marked * are in the application are mandatory. Incomplete registrations will not be processed.
All applicants will be informed of the status of their application (successful, waiting list, rejected) by 14 October. If you have any questions regarding the application process please contact Sophie Spencer.
Participant Flash Talks
All participants will be asked to give a short presentation about the services they provide as core facility managers and/or their research work as part of the course. These talks provide an opportunity to share their research with the other participants and provide a forum for discussion. Further details will be provided following registration.