Virtual course
Data-driven approaches to understanding dementia
Please note that this course, originally advertised as face-to-face, will now be delivered virtually. This course provides individuals working in dementia research with the skills to access and analyse dementia data. Participants will learn to apply bioinformatics methodologies, combine different data types, and utilise relevant dementia data resources, enhancing their research capabilities in the field.
Who is this course for?
The course is aimed at individuals working in the dementia research space who have minimal experience in bioinformatics. Applicants are expected to be at an early stage of using bioinformatics in their research with the need to develop their skills and knowledge further. Participants will need a basic knowledge of the Unix command line, and the R statistical package.
We recommend these free tutorials:
- Introduction to the Unix environment – https://swcarpentry.github.io/shell-novice/index.html
- Introduction to R – https://swcarpentry.github.io/r-novice-inflammation/
- Introduction to Python – http://swcarpentry.github.io/python-novice-gapminder/
What will I learn?
Learning outcomes
After this course you should be able to:
- Explore publicly available data of interest, including dementia specific resources
- Use software and tools to manipulate and analyse data
- Apply appropriate bioinformatics methodologies to dementia research projects
- Combine different types of data to gain further insights
- Identify EMBL-EBI data resources to access and analyse relevant data
Course content
During this course, you will learn about:
- Single-cell analysis in dementia research
- Databases for regulatory information
- Biomarkers and polygenic risk score
- Tools for uncovering mechanisms of dementia from omics datasets
- BioImaging in dementia
- Machine learning approaches in dementia
- Dementia data resources: DataMap and DPUK
- EMBL-EBI data resources: ChEMBL, Gene Expression Atlas, Open Targets, PGS Catalog, and PRIDE
Trainers
Edward Avezov
UK Dementia Research Institute; University of Cambridge Sarah Bauermeister
Dementia Platform UK Gabriel Mateus Bernardo-Harrington
Cardiff University Charlotte Capitanchik
King's College London Daria Gavriouchkina
UK Dementia Research Institute Deepti Jaiswal Kundu
EMBL-EBI Samaneh Kouchaki
Centre for Vision, Speech and Signal Processing, University of Surrey Pierre Parutto
UK Dementia Research Institute; University of Cambridge Anita Scoones
Earlham Institute Emily Simmonds
UK Dementia Research Institute Mark Fiers
Katholieke Universiteit Leuven Maryam Shoai
University College London Nikolai Hecker
UK Dementia Research Institute Sadegh Abadijou
UK Dementia Research Institute Alexander Becalick
University College London Alejandro Martinez-Carrasco
Broad Institute Manuela Tan
University College London Emma Jayne Manners
EMBL-EBI Kafayat Adeoye
Dementias Platform UK
Programme
All times in the programme are listed in BST. The programme is subject to minor changes.
Day/Time
Topic
Trainer
Day one – Monday 13 April 2026
11:00 – 11:30
Welcome and introduction to EMBL-EBI
Ajay Mishra
11:30 – 12:30
Introduction to single-cell research in dementia
Anita Scoones
12:30 – 13:15
Lunch
13:15 – 15:15
Application of single-cell analysis to dementia research: practical
Daan Moechars and Mark Fiers
15:15 – 15:30
Break
15:30 – 15:45 Flash talks 15:45 – 16:45 Application of single-cell analysis to dementia research: practical Daan Moechars and Mark Fiers 16:45 – 17:45 Introduction to Expression Atlas and Single Cell Expression Atlas Silvie Korena Fexova 17:45 End of day Day two – Tuesday 14 April 2026
09:30 – 11:30
Dementia Platform UK
Kafayat Adeoye
11:30 – 12:00
Break
12:00 – 13:00
Data harmonisation in dementia
Manuela Tan and Alejandro Martinez-Carrasco 13:00 – 14:00
Lunch
14:00 – 14:15 Flash talks 14:15 – 15:15 Extracting information from omics data: lecture Mateus Bernardo-Harrington and Charlotte Capitanchik 15:15 – 15:45 Break 15:45 – 17:45 Extracting information from omics data: practical Mateus Bernardo-Harrington & Charlotte Capitanchik 17:45 End of day Day three – Wednesday 15 April 2026
09:30 – 11:30
Risk Prediction Modelling in Alzheimer’s Disease: Polygenic risk score
Emily Simmonds and Ganna Leonenko
11:30 – 12:00
Break
12:00 – 13:00
DataMap knowledge graph
Sadegh Abadijou and Li Ling Lee
13:00 – 14:00
Lunch
14:00 – 14:15 Flash talks 14:15 Group photo 14:15 – 15:15 Machine learning approaches in dementia: lecture Maryam Shoai and Samaneh Kouchaki 15:15 – 15:45 Break 15:45 – 17:45 Machine learning approaches in dementia: practical Maryam Shoai and Samaneh Kouchaki 17:45 End of day Day four – Thursday 16 April 2026
09:30 – 10:30
BioImaging in dementia
Edward Avezov and Pierre Parutto
10:30 – 11:00
Break
11:00 – 13:00
Imaging practical
Edward Avezov and Pierre Parutto
13:00 – 14:00
Lunch
14:00 – 14:15 Flash talks 14:15 – 15:15 Spatial biology: lecture Daria Gavriouchkina 15:15 – 15:45 Break 15:45 – 17:45 Spatial biology: practical Daria Gavriouchkina, Nikolai Hecker, and Alexander Becalick 17:45 End of day Day five – Friday 17 April 2026
09:30 – 10:30
Open Targets
Annalisa Buniello and Helena Cornu
10:30 – 11:00
Break
11:00 – 12:30
PRIDE
Deepti Kundu and Ananth Prakash
12:30 – 13:30
Lunch
13:30 – 13:45 Flash talks 13:45 – 14:30 ChEMBL Emma Jayne Manners 14:30 – 15:15 PGS catalog Santhi Ramachandran 15:15 – 15:45 Break 15:45 – 16:45 BioImage Archive Melina Velasquez 16:45 – 17:00 Wrap up Ajay Mishra 17:00 End of course
Course materials:
The materials for the 2025 course are available for you to browse. These provide a snapshot of the content that will be covered in the 2026 course.
Please read our support page before starting your application. To be considered for a place on this course, you must do the following:
- Complete the online application form.
- Ensure you add relevant information to the ‘submission details’ section where you are asked to provide information on your:
- pre-requisite skills and knowledge
- current work and course expectations
- data availability
- Upload one letter of support from your supervisor or a senior colleague detailing reasons why you should be selected for the course.
Please submit all documents during the application process by 23:59 GMT on 25 January 2026. Items marked * in the application are mandatory. Incomplete applications will not be processed.
All applicants will be informed of the status of their application (successful, waiting list, unsuccessful) by 9 February 2026. If you have any questions regarding the application process, please contact Meredith Willmott.
Fees
The registration fee includes:
- access to the full five-day course programme
- access to a bespoke online course handbook
- secure community space on Slack
- virtual machine to work on that is accessed via the internet
- dedicated online support team
- certificate on completion of the course
Academia
£240.00
Industry*
£340.00
* If your company is an EMBL-EBI Industry Programme Member, discounts may be available. This will apply automatically on registration if applicable; alternatively, please contact your event organiser for more information.
Financial assistance
Financial assistance is available to a limited number of participants attending this course.
Registration fee waivers
A limited number of registration fee waivers are offered for this course.
- Application process:
- Apply for the fee waiver alongside your course application.
- Provide a brief explanation of why you require the waiver and how attending the course will benefit your career.
- Notification:
- You will be informed of your waiver status at the same time as the outcome of your course application.
- If awarded, the registration fee will be waived entirely.
Financial assistance terms and conditions
- Selection process: Recipients of financial assistance will be selected by the scientific organisers during the course application review.
- Selection criteria:
- Selection is based on scientific merit, your current work or study location, the need for financial support, and the career impact of attending the course.
- Priority will be given to applicants from Low- and Middle-Income Countries (LMICs).
- Fair consideration: Applying for financial assistance will not impact the outcome of your course application.
Event terms and conditions
- Selection process: Recipients will be selected by the scientific organisers during the course application review.
- Selection criteria:
- Selection is based on scientific merit, your current work or study location, the need for financial support, and the career impact of attending the course.
- Priority will be given to applicants from Low- and Middle-Income Countries (LMICs).
- Fair consideration: Applying for financial assistance will not affect your course application outcome.
UK Dementia Research Institute; University of Cambridge
Dementia Platform UK
Cardiff University
King's College London
UK Dementia Research Institute
EMBL-EBI
Centre for Vision, Speech and Signal Processing, University of Surrey
UK Dementia Research Institute; University of Cambridge
Earlham Institute
UK Dementia Research Institute
Katholieke Universiteit Leuven
University College London
UK Dementia Research Institute
UK Dementia Research Institute
University College London
Broad Institute
University College London
EMBL-EBI
Dementias Platform UK
Programme
All times in the programme are listed in BST. The programme is subject to minor changes.
Day/Time | Topic | Trainer | |
Day one – Monday 13 April 2026 | |||
11:00 – 11:30 | Welcome and introduction to EMBL-EBI | Ajay Mishra | |
11:30 – 12:30 | Introduction to single-cell research in dementia | Anita Scoones | |
12:30 – 13:15 | Lunch | ||
13:15 – 15:15 | Application of single-cell analysis to dementia research: practical | Daan Moechars and Mark Fiers | |
15:15 – 15:30 | Break | ||
| 15:30 – 15:45 | Flash talks | ||
| 15:45 – 16:45 | Application of single-cell analysis to dementia research: practical | Daan Moechars and Mark Fiers | |
| 16:45 – 17:45 | Introduction to Expression Atlas and Single Cell Expression Atlas | Silvie Korena Fexova | |
| 17:45 | End of day | ||
Day two – Tuesday 14 April 2026 | |||
09:30 – 11:30 | Dementia Platform UK | Kafayat Adeoye | |
11:30 – 12:00 | Break | ||
12:00 – 13:00 | Data harmonisation in dementia | Manuela Tan and Alejandro Martinez-Carrasco | |
13:00 – 14:00 | Lunch | ||
| 14:00 – 14:15 | Flash talks | ||
| 14:15 – 15:15 | Extracting information from omics data: lecture | Mateus Bernardo-Harrington and Charlotte Capitanchik | |
| 15:15 – 15:45 | Break | ||
| 15:45 – 17:45 | Extracting information from omics data: practical | Mateus Bernardo-Harrington & Charlotte Capitanchik | |
| 17:45 | End of day | ||
Day three – Wednesday 15 April 2026 | |||
09:30 – 11:30 | Risk Prediction Modelling in Alzheimer’s Disease: Polygenic risk score | Emily Simmonds and Ganna Leonenko | |
11:30 – 12:00 | Break | ||
12:00 – 13:00 | DataMap knowledge graph | Sadegh Abadijou and Li Ling Lee | |
13:00 – 14:00 | Lunch | ||
| 14:00 – 14:15 | Flash talks | ||
| 14:15 | Group photo | ||
| 14:15 – 15:15 | Machine learning approaches in dementia: lecture | Maryam Shoai and Samaneh Kouchaki | |
| 15:15 – 15:45 | Break | ||
| 15:45 – 17:45 | Machine learning approaches in dementia: practical | Maryam Shoai and Samaneh Kouchaki | |
| 17:45 | End of day | ||
Day four – Thursday 16 April 2026 | |||
09:30 – 10:30 | BioImaging in dementia | Edward Avezov and Pierre Parutto | |
10:30 – 11:00 | Break | ||
11:00 – 13:00 | Imaging practical | Edward Avezov and Pierre Parutto | |
13:00 – 14:00 | Lunch | ||
| 14:00 – 14:15 | Flash talks | ||
| 14:15 – 15:15 | Spatial biology: lecture | Daria Gavriouchkina | |
| 15:15 – 15:45 | Break | ||
| 15:45 – 17:45 | Spatial biology: practical | Daria Gavriouchkina, Nikolai Hecker, and Alexander Becalick | |
| 17:45 | End of day | ||
Day five – Friday 17 April 2026 | |||
09:30 – 10:30 | Open Targets | Annalisa Buniello and Helena Cornu | |
10:30 – 11:00 | Break | ||
11:00 – 12:30 | PRIDE | Deepti Kundu and Ananth Prakash | |
12:30 – 13:30 | Lunch | ||
| 13:30 – 13:45 | Flash talks | ||
| 13:45 – 14:30 | ChEMBL | Emma Jayne Manners | |
| 14:30 – 15:15 | PGS catalog | Santhi Ramachandran | |
| 15:15 – 15:45 | Break | ||
| 15:45 – 16:45 | BioImage Archive | Melina Velasquez | |
| 16:45 – 17:00 | Wrap up | Ajay Mishra | |
| 17:00 | End of course | ||
Course materials:
The materials for the 2025 course are available for you to browse. These provide a snapshot of the content that will be covered in the 2026 course.
Please read our support page before starting your application. To be considered for a place on this course, you must do the following:
- Complete the online application form.
- Ensure you add relevant information to the ‘submission details’ section where you are asked to provide information on your:
- pre-requisite skills and knowledge
- current work and course expectations
- data availability
- Upload one letter of support from your supervisor or a senior colleague detailing reasons why you should be selected for the course.
Please submit all documents during the application process by 23:59 GMT on 25 January 2026. Items marked * in the application are mandatory. Incomplete applications will not be processed.
All applicants will be informed of the status of their application (successful, waiting list, unsuccessful) by 9 February 2026. If you have any questions regarding the application process, please contact Meredith Willmott.
Fees
The registration fee includes:
- access to the full five-day course programme
- access to a bespoke online course handbook
- secure community space on Slack
- virtual machine to work on that is accessed via the internet
- dedicated online support team
- certificate on completion of the course
Academia | £240.00 |
Industry* | £340.00 |
* If your company is an EMBL-EBI Industry Programme Member, discounts may be available. This will apply automatically on registration if applicable; alternatively, please contact your event organiser for more information.
Financial assistance
Financial assistance is available to a limited number of participants attending this course.
Registration fee waivers
A limited number of registration fee waivers are offered for this course.
- Application process:
- Apply for the fee waiver alongside your course application.
- Provide a brief explanation of why you require the waiver and how attending the course will benefit your career.
- Notification:
- You will be informed of your waiver status at the same time as the outcome of your course application.
- If awarded, the registration fee will be waived entirely.
Financial assistance terms and conditions
- Selection process: Recipients of financial assistance will be selected by the scientific organisers during the course application review.
- Selection criteria:
- Selection is based on scientific merit, your current work or study location, the need for financial support, and the career impact of attending the course.
- Priority will be given to applicants from Low- and Middle-Income Countries (LMICs).
- Fair consideration: Applying for financial assistance will not impact the outcome of your course application.
Event terms and conditions
- Selection process: Recipients will be selected by the scientific organisers during the course application review.
- Selection criteria:
- Selection is based on scientific merit, your current work or study location, the need for financial support, and the career impact of attending the course.
- Priority will be given to applicants from Low- and Middle-Income Countries (LMICs).
- Fair consideration: Applying for financial assistance will not affect your course application outcome.