Course at EMBL-EBI
Data-driven approaches to understanding dementia
This course provides individuals working in dementia research with the skills to access and analyse dementia data. Participants will learn to apply bioinformatics methodologies, combine different data types, and utilise relevant dementia data resources, enhancing their research capabilities in the field.
Who is this course for?
The course is aimed at individuals working in the dementia research space who have minimal experience in bioinformatics. Applicants are expected to be at an early stage of using bioinformatics in their research with the need to develop their skills and knowledge further. Participants will need a basic knowledge of the Unix command line, and the R statistical package.
We recommend these free tutorials:
- Introduction to the Unix environment – https://swcarpentry.github.io/shell-novice/index.html
- Introduction to R – https://swcarpentry.github.io/r-novice-inflammation/
- Introduction to Python – http://swcarpentry.github.io/python-novice-gapminder/
What will I learn?
Learning outcomes
After this course you should be able to:
- Explore publicly available data of interest, including dementia specific resources
- Use software and tools to manipulate and analyse data
- Apply appropriate bioinformatics methodologies to dementia research projects
- Combine different types of data to gain further insights
- Identify EMBL-EBI data resources to access and analyse relevant data
Course content
During this course, you will learn about:
- Single-cell analysis in dementia research
- Databases for regulatory information
- Biomarkers and polygenic risk score
- Tools for uncovering mechanisms of dementia from omics datasets
- BioImaging in dementia
- Machine learning approaches in dementia
- Dementia data resources: DataMap and DPUK
- EMBL-EBI data resources: ChEMBL, Gene Expression Atlas, Open Targets, PGS Catalog, and PRIDE
Trainers
Edward Avezov
UK Dementia Research Institute; University of Cambridge Sarah Bauermeister
Dementia Platform UK Gabriel Mateus Bernardo-Harrington
Cardiff University Charlotte Capitanchik
King's College London Daria Gavriouchkina
UK Dementia Research Institute Deepti Jaiswal Kundu
EMBL-EBI Samaneh Kouchaki
Centre for Vision, Speech and Signal Processing, University of Surrey Pierre Parutto
UK Dementia Research Institute; University of Cambridge Anita Scoones
Earlham Institute Emily Simmonds
UK Dementia Research Institute Mark Fiers
Katholieke Universiteit Leuven Maryam Shoai
University College London Nikolai Hecker
UK Dementia Research Institute Sadegh Abadijou
UK Dementia Research Institute
UK Dementia Research Institute; University of Cambridge
Dementia Platform UK
Cardiff University
King's College London
UK Dementia Research Institute
EMBL-EBI
Centre for Vision, Speech and Signal Processing, University of Surrey
UK Dementia Research Institute; University of Cambridge
Earlham Institute
UK Dementia Research Institute
Katholieke Universiteit Leuven
University College London
UK Dementia Research Institute
UK Dementia Research Institute
Programme
All times in the programme are listed in BST. The programme is subject to minor changes.
Day/Time | Topic | Trainer |
Day one – Monday 13 April 2026 | ||
10:30 – 11:00 | Registration and coffee | |
11:00 – 11:30 | Welcome and introduction to EMBL-EBI | Ajay Mishra |
11:30 – 12:30 | Introduction to single-cell research in dementia | Anita Scoones |
12:30 – 13:15 | Lunch | |
13:15 – 15:15 | Application of single-cell analysis to dementia research: practical | Mark Fiers |
15:15 – 15:30 | Break | |
| 15:30 – 16:30 | Application of single-cell analysis to dementia research: practical | Mark Fiers |
16:30 – 17:30 | Introduction to Expression Atlas and Single Cell Expression Atlas | Silvie Korena Fexova |
17:30 | End of day | |
| 17:30 – 18:30 | Accommodation check-in | |
19:00 | Dinner | |
Day two – Tuesday 14 April 2026 | ||
09:30 – 11:30 | Dementia Platform UK | Sarah Bauermeister |
11:30 – 12:00 | Break | |
12:00 – 13:00 | Data harmonisation in dementia | To be confirmed |
13:00 – 14:00 | Lunch | |
14:00 – 15:00 | Extracting information from omics data: lecture | Mateus Bernardo-Harrington and Charlotte Capitanchik |
15:00 – 15:30 | Break | |
15:30 – 17:30 | Extracting information from omics data: practical | Mateus Bernardo-Harrington & Charlotte Capitanchik |
17:30 | Break | |
18:00 – 19:30 | Poster session with drinks and dinner | |
| 19:30 | End of day | |
Day three – Wednesday 15 April 2026 | ||
09:30 – 11:30 | Polygenic risk score | Emily Simmonds and Ganna Leonenko |
11:30 – 12:00 | Break | |
12:00 – 13:00 | DataMap knowledge graph | Sadegh Abadijou |
13:00 – 14:00 | Lunch | |
14:00 – 15:00 | Machine learning approaches in dementia: lecture | Maryam Shoai and Samaneh Kouchaki |
15:00 – 15:30 | Break | |
15:30 – 17:30 | Machine learning approaches in dementia: practical | Maryam Shoai and Samaneh Kouchaki |
17:30 – 18:00 | Break | |
18:00 – 19:30 | Poster session with drinks and dinner | |
| 19:30 | End of day | |
Day four – Thursday 16 April 2026 | ||
09:30 – 10:30 | BioImaging in dementia | Edward Avezov and Pierre Parutto |
10:30 – 11:00 | Break | |
11:00 – 13:00 | Imaging practical | Edward Avezov and Pierre Parutto |
13:00 – 14:00 | Lunch | |
14:00 – 15:00 | Spatial biology: lecture | Daria Gavriouchkina |
15:00 – 15:30 | Break | |
15:30 – 17:30 | Spatial biology: practical | Daria Gavriouchkina and Nikolai Hecker |
17:30 | End of day | |
19:00 | Dinner | |
Day five – Friday 17 April 2026 | ||
09:30 – 10:30 | Open Targets | Annalisa Buniello and Helena Cornu |
10:30 – 11:00 | Break | |
11:00 – 12:30 | PRIDE | Deepti Kundu and Ananth Prakash |
12:30 – 13:30 | Lunch | |
13:30 – 14:15 | ChEMBL | ChEMBL team
|
14:15 – 15:00 | PGS catalog | Santhi Ramachandran |
15:00 – 15:30 | Break | |
15:00 – 16:00 | BioImage Archive | Melina Velasquez |
16:00 – 16:15 | Wrap up | Ajay Mishra |
16:15 | End of course | |
16:30 | Coach to Cambridge | |
Course materials:
The materials for the 2025 course are available for you to browse. These provide a snapshot of the content that will be covered in the 2026 course.
Please read our support page before starting your application. To be considered for a place on this course, you must do the following:
- Complete the online application form.
- Ensure you add relevant information to the ‘submission details’ section where you are asked to provide information on your:
- pre-requisite skills and knowledge
- current work and course expectations
- data availability
- Upload one letter of support from your supervisor or a senior colleague detailing reasons why you should be selected for the course.
Please submit all documents during the application process by 23:59 GMT on 5 January 2026. Items marked * in the application are mandatory. Incomplete applications will not be processed.
All applicants will be informed of the status of their application (successful, waiting list, unsuccessful) by 16 January 2026. If you have any questions regarding the application process, please contact Anca Belu.
Fees
The registration fee includes:
- Catering as detailed on the course programme
- Accommodation for four nights (13, 14, 15 and 16 April) at Hinxton Hall Conference Centre
- Bespoke course handbook with links to all course materials
- Use of a computer in the EMBL-EBI training suite throughout the course
- Secure virtual machines for the practical sessions listed in the programme
- Shuttle bus on the final course day to Cambridge train station
Academia | £925.00 |
Industry* | £1,225.00 |
* If your company is an EMBL-EBI Industry Programme Member, discounts may be available. This will apply automatically on registration if applicable; alternatively, please contact your event organiser for more information.
Financial assistance
Financial assistance is available to a limited number of participants attending this course.
Registration fee waivers
A limited number of registration fee waivers are offered for this course.
- Application process:
- Apply for the fee waiver alongside your course application.
- Provide a brief explanation of why you require the waiver and how attending the course will benefit your career.
- Notification:
- You will be informed of your waiver status at the same time as the outcome of your course application.
- If awarded, the registration fee will be waived entirely.
Travel grants
A limited number of travel grants of up to £1,000.00 are available to support participants' travel expenses.
- Covered expenses:
- Airfare, train, bus, taxi, and visa costs.
- Application process:
- Apply for the travel grant when submitting your course application.
- You will be informed of the grant decision, including the amount awarded, along with your course application outcome.
- Reimbursement process:
- Participants must pay upfront for their travel costs.
- A reimbursement form will be provided upon course completion.
- Submit the completed form with receipts within one month of travel completion.
- Grant adjustment:
- The organisers may adjust the grant amount to accommodate more participants.
Financial assistance terms and conditions
- Selection process: Recipients of financial assistance will be selected by the scientific organisers during the course application review.
- Selection criteria:
- Selection is based on scientific merit, your current work or study location, the need for financial support, and the career impact of attending the course.
- Priority will be given to applicants from Low- and Middle-Income Countries (LMICs).
- Fair consideration: Applying for financial assistance will not impact the outcome of your course application.
Additional information
Posters
All participants are expected to present a poster, and successful applicants will be asked to submit their poster upon registration. We expect the posters to act as a talking point between you, other participants, and the trainers on the course. They should give the reader an idea of the work you are engaged in, what you are planning to do next, and anything of interest that might be useful for sharing with the gathered participants.
Travel information
Electronic Travel Authorisations (ETAs) are needed for visitors to the UK who do not currently need a visa for short stays, or who do not already have a UK immigration status. Full details and information on how to apply can be found at the UK Gov website.
Event terms and conditions
- Selection process: Recipients will be selected by the scientific organisers during the course application review.
- Selection criteria:
- Selection is based on scientific merit, your current work or study location, the need for financial support, and the career impact of attending the course.
- Priority will be given to applicants from Low- and Middle-Income Countries (LMICs).
- Fair consideration: Applying for financial assistance will not affect your course application outcome.