EMBL-EBI workshop: Introduction to Sequence Searching

Date:

  Tuesday 6 February 2018

Venue: 

University of Cambridge - Downing Site, Cambridge,  CB2 3AR, United Kingdom

Participation: 

First come, first served

Contact: 

Louisa Bellis

Course Overview

This module introduces the area of sequence similarity searching and focuses on how to use tools like BLAST and PSI-Search to find homologous sequences in EMBL-EBI databases, including tips on which tool and database to use, input formats, how to change parameters and how to interpret the results pages.

Audience

The module is designed for researchers who need to undertake sequence searching as part of their work. No previous bioinformatics experience is required, but an undergraduate level knowledge of biology would be an advantage.

Modules and resources

Web-based pairwise sequence alignment tools and Web-based sequence similarity search tools such as BLAST, FASTA, PSI-BLAST, PSI-SEARCH

Learning outcomes

Participants should be able to:

  • describe the basics of sequence similarity searching and sequence homology
  • identify related biological sequence data across EMBL-EBI resources
  • use different sequence similarity tools and select appropriate tools for different applications.

Programme

This course runs from 13:30-17:30 including breaks.