VEPTC 2017 Practical Session: The Ensembl Genome Browser

Date:

 Monday 6 Wednesday 8 November 2017

Venue: 

NH Prague City Hotel - NH Prague City Hotel, Mozartova 261/1, 150 00 Praha 5,  Prague, Czech Republic

Participation: 

First come, first served

Contact: 

Benjamin Moore

Registration closed

Dates additional information: 

This workshop forms part of the Variant Effect Prediction Training Course (VEPTC) conference 2017. Registration and attendance at the VEPTC2017 conference is required to attend the Ensembl workshop session.

Course Overview

The Ensembl project at www.ensembl.org provides a comprehensive and integrated source of annotation of mainly vertebrate genome sequences. This short 1.5 hour workshop offers participants the possibility of gaining hands-on experience of using the Ensembl genome browser to access variation data and using the Variant Effect Predictor (VEP) to analyse the functional consequences of variants.

The workshop is primarily targeted at wetlab researchers and bioinformaticians.

Feedback from previous courses: "There are probably quite few people out there who all assume that Ensembl today is the same as it was years ago. It is not. With many new features and datasets incorporated/interlinked, it offers data exploration like never before. This course was a very useful update on what Ensembl has become" Browser workshop, CRUK, April 2016

"Very useful workshop, certainly one of the most informative and useful I have attended. Delivered by someone who was extremely familiar with the website and its capabilities, not someone who had used it a couple of times and proclaimed themselves to be an expert." Browser workshop, Cardiff, March 2014

Audience

Wet-lab scientists and bioinformaticians

Learning outcomes

  • Learn about the data types in Ensembl
  • Learn how to view variation data in the Ensembl browser
  • Learn how to annoatte variants using the Variant Effect Predictor (VEP)