EMBL-EBI workshop: Interactions and Pathways - Reactome

Date:

  Thursday 23 November 2017

Venue: 

The Francis Crick Institute - 1 Midland Road, London,  NW1 1AT, United Kingdom

Participation: 

First come, first served

Contact: 

David Hudson

Registration closed

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Course Overview

This workshop will give an introduction to the Reactome pathway database website and analysis tools, using short presentations and practical hands-on exercises. The session will also explain where to learn more, get help, and how to become involved in adding more pathway information to Reactome.

 

During this course you will learn about:

  • The need for pathway databases such as Reactome
  • Reactome pathways diagrams
  • Navigating the Pathway browser
  • Analysing your own data with Reactome  

Audience

This workshop is aimed at researchers who want to learn about pathways or identify pathways relevant to a set of molecules.  No previous experience of bioinformatics is required, but an undergraduate level knolwedge of Biology would be an advantage.

Modules

  • interactions-and-pathways

Learning outcomes

After this course you should be able to:

  • Navigate the Reactome Pathway browser, search pathways and understand pathway diagrams
  • Find proteins or compounds represented in Reactome
  • Extend Reactome pathways with protein-protein or protein-compound interactions from relevant databases or with your own interactions data
  • Map your own lists of genes, proteins, or compounds to Reactome pathways and identifying the pathways that are over-represented
  • Visualise pathway expression levels using your own microarray or protein dataset