EMBL-EBI Bioinformatics Workshop, Portugal

Date:

 Monday 21 - Wednesday 23 July 2014

Venue: 

University of Aveiro - Campus Universitário de Santiago, 3810-193,  Aveiro, Portugal

Participation: 

First come, first served

Contact: 

Johanna Langrish

Registration closed

Course Overview

This course will provide an overview of EBI resources available for gene and protein analysis.

Audience

This workshop forms part of an integrated programme run for doctoral students studying Biology at the University of Aveiro, Portugal and associated institues.

Modules

  • introduction-embl-ebi-resources-and-tools
  • ensemblensembl-genomes
  • sequence-searching-and-alignments
  • interactions-and-pathways
  • protein-sequence-and-function-uniprot-gene-ontology

Learning outcomes

After this course you should be able to:

  • Use Ensembl genomes and interpret comparative genomics data
  • Undertake sequence searching and alignment using a variety of tools based at EMBL-EBI
  • Browse the Inter-Pro database and use the specialised sequence searching functions
  • Learn how to explore reactions and pathways, making us of molecular interaction databases

Programme

Time Topic Trainer
Day 1 - 21 July 2014 - Ensembl Genomes
10:00 Ensembl Genomes Denise Carvalho-Silva
13:00 Lunch  
14:00 Ensembl Genomes Denise Carvalho-Silva
17:00 Session wrap up  
Day 2 - 22 July 2014 - Overview of EBI Resources and Sequence Searching
09:30 Overview of EBI resources Tom Hancocks
11:00 Sequence Searching Tom Hancocks
13:00 Lunch  
14:00 Sequence Searching Tom Hancocks
17:00 Session wrap up Tom Hancocks
Day 3 - 23 July 2014 - Protein Classification and Interactions and Pathways
09:30 Protein function and classification Sandra Orchard
13:00 - 13:30 Lunch
13:30 Interactions and Pathways Sandra Orchard
16:00 Session wrap up & Feedback Sandra Orchard
University of Aveiro
Campus Universitário de Santiago 3810-193 Aveiro Portugal

How to apply

Registration is closed.

 

Registration closed

Organisers

Claudia Oliveira

Sarah Morgan - EMBL-EBI, UK

Trainers

Denise Carvalho-Silva - EMBL-EBI, UK

Tom Hancocks - EMBL-EBI, UK

Sandra Orchard - EMBL-EBI, UK