Programmatic access of Proteomics Resources

Date:

  Monday 28 July 2008

Application deadline: 

Tuesday 01 July 2008

Registration closed

Overview

This course consists of a mix of lectures and practical experience in accessing proteomics resources. An overview of each of the databases will introduce participants to the types of data, the way the data are stored and the connection between databases. Subsequently database-specific lectures will address the programmatic accessibility of the data and data integration between resources. This new knowledge will then be applied in hands-on tutorials.

Topics include


Topics centre around programmatically accessing several resources, including:

  • Introduction to Proteomics Databases at the EBI
  • Relationships among Proteomic Databases at the EBI
  • Refreshing Web Services in Java
  • Programmatic access of the following resources:
  • Integrating data across: BioMart and EnCORE (Enfin)

Additional information

Programme

Time Topic
Day1-Monday 28th
12:45 - 13:00 Welcoming
13:00 -13:20 General Introduction To Proteomics (Lennart Martens)
13:20 - 13:45 UniProt Intro (Samuel Patient)
13:45 - 14:00 InterPro Intro ( James Watson)
14:00 – 14:15 Reactome Intro (David Croft)
14:15 – 15:00 Pride Intro (Phil Jones)
15:00 – 15:15 IntAct Intro (Samuel Kerrien)
15:15 – 15:30 Tea break
15:30 – 15:45 Relationships amongst the databases (Hamish McWilliam)
15:45 – 17:30 Open discussion on data (all trainers)
Day 2-Tuesday 29th
09:30 - 11:00  Refreshing Webservices (Hamish McWilliam)
11:00 – 11:15 Coffee break
11:15 - 13:00 UniProt Hands-On (Samuel Patient)
13:00 - 14:00 Lunch
14:00 – 15:15 UniProt Hands-On continues
15:15 – 15:30 Tea break
15:15 – 17:30 InterPro Hands-On (Hamish McWilliam)
Day 3-Wednesday 30th
9:30 - 11:30 Reactome Hands-On (David Croft)
11:30 - 11:45 Coffee break
11:45 – 13:00 IntAct Hands-On (Samuel Kerrien)
13:00 - 14:00 Lunch
14:00- 15:30 IntAct Hands-On continues
15:30 -15:45 Tea break
15:45 – 17:30 Pride and BioMart Hands-On (Phil Jones)
Day 4-Thursday 31st
09:30 - 11:00 PicR/OLS Hands-On (Richard Cote)
11:00 – 11:15 Coffee break
10:45 – 13:00 Encore Hands-On (Florian Reisinger)
13:00 - 14:00 Lunch
14:00 - 15:00 Optional Hands-On Session and extension exercises (all trainers)