Figure 6 - full size

 

Figure 6.
Fig. 6. Cartoon of the proposed reaction schemes. Distortions of the carboxyl, cyano, iodo, and azido groups play an important role in the reaction catalyzed by ODCase. “P-Rib” indicates ribose 5′-monophosphate. (a) The reaction from OMP to UMP catalyzed by native ODCase. (b) Covalent-bond formation between the mutant ODCase and 6-CN-UMP. (c) The conversion of 6-CN-UMP to BMP catalyzed by native ODCase. (d) Covalent-bond formation between the native ODCase and 6-I-UMP or 6-N[3]-UMP. (e) The conversion of 6-I-UMP to BMP by K72A MtODCase. Distortion of the bond linking the pyrimidine ring to the C6 substituent is conserved in all these reactions, the physiologically relevant decarboxylation and the nucleophilic mechanisms.

The above figure is reprinted by permission from Elsevier: J Mol Biol (2009, 387, 1199-1210) copyright 2009.