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Figure 4.
Figure 4. Summary of Protein–DNA ContactsThe DNA is
represented as an opened-out helix. Direct hydrogen bonds
between the protein and the DNA are indicated by arrows. Water
(W)-mediated interactions are shown by broken arrows.
Hydrophobic contacts are indicated by arrows with round heads
(Me, methyl group of thymidine; C, C5 atom of cytosine).
Contacted phosphate groups (black) and deoxyribose rings (gray)
are indicated by closed circles.
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