Figure 2 - full size

 

Figure 2.
Figure 2. (a) Stereo view of the E186Q/maltopentaose (shown in magenta) superimposed on the wild-type/maltose (shown in yellow) structure at the active site. The protein residues of each complex were superimposed using the RIGID program of TURBO-FRODO. Comparison of the two structures revealed almost the same conformation at the active site, except for in the main-chain region around the Thr342 residue. (b) Comparison of the hydrogen bonding pattern between the structures of E186Q/maltopentaose (magenta) and wild-type/maltose (yellow) around subsites -1 and +1 in stereo. The dotted lines indicate the hydrogen bond interactions. A putative attacking water molecule (H[2]O 712) was observed at the position corresponding to the O1 atom of Glc( -1) in the wild-type/maltose structure. The intramolecular hydrogen bonds between Glu186, Arg188, and Tyr192 were not greatly altered, but there was no interaction between Gln186 and Thr342 due to the main-chain conformational change in the 340-343 residues. The NE2 atom of Gln186 formed a hydrogen bond with the O4 atom of Glc(+1) at a distance of 2.9 Å.

The above figure is reprinted by permission from Elsevier: J Mol Biol (2004, 339, 1129-1140) copyright 2004.