Figure 1 - full size

 

Figure 1.
FIGURE 1. Conformational changes associated with substrate binding. a, superimposition of unliganded ABBB in the open form (white) with AABB+UDP-Gal+DA in the closed form (yellow/red) showing the internal and C-terminal loops (red), UDP-Gal and DA (orange), and Mn^2+ (blue), and the location of Arg^176. b, expanded view about the active site with an arrow indicating the movement of the internal loop toward the donor in going from the open state to both the semi-closed or closed states, and showing the ordering of the C-terminal residues to form the closed state. c, stereoview of electron density corresponding to the internal loop in AABB+UDP showing two distinct conformations of the enzyme (at 50% occupancy) corresponding to the open (yellow) and semi-closed (green) forms of the enzyme. The disorder converges at Met^189 (gray). d, the transformation of the internal loop (residues 176-195) from the open (left) to the semi-closed (right) conformation is accomplished by the merger of two -helices (Arg^180-Met^186 and Arg^187-Asp^194) into a distorted helical structure with alternating -3[10]- character. The pivot point is indicated by a star.

The above figure is reprinted by permission from the ASBMB: J Biol Chem (2008, 283, 10097-10108) copyright 2008.