PDBsum entry 9u4y

Tunnel analysis for: 9u4y calculated with

MOLE 2.0

PDB id

9u4y

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

7 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.29

1.44

22.9

0.45

-0.12

7.8

90

0

2

2

7

1

1

0

2

1.23

1.46

23.3

1.00

0.23

8.7

86

1

2

2

8

1

1

0

3

1.23

2.42

30.3

0.58

0.32

5.1

78

0

1

2

8

4

0

1

4

1.40

1.41

37.9

-0.60

0.12

17.1

76

4

3

2

4

3

2

0

PCA 1 C

5

1.40

1.65

43.6

-0.46

0.26

15.7

73

4

2

1

6

4

2

0

PCA 1 C

6

1.19

1.20

15.7

1.52

0.41

5.4

86

1

1

1

5

1

0

0

7

1.44

1.56

15.9

0.86

0.65

5.9

68

0

1

1

5

2

1

0

8

1.36

1.36

16.1

-0.95

-0.26

25.6

79

2

2

0

5

0

0

1

9

1.50

1.50

16.1

-0.63

-0.28

19.6

82

1

2

2

3

1

0

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.