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PDBsum entry 9omp

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Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 9omp calculated with MOLE 2.0 PDB id
9omp
Pores calculated on whole structure Pores calculated excluding ligands

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13 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.37 2.34 148.4 -2.06 -0.65 19.4 83 12 14 13 5 3 2 0  
2 1.33 1.33 35.4 -1.32 -0.30 11.6 75 2 3 0 0 2 1 0  
3 1.94 1.94 37.5 0.12 -0.18 8.2 80 2 3 0 4 2 0 0  
4 1.34 1.68 49.5 0.20 0.12 8.7 86 2 2 2 7 3 1 0  
5 1.64 1.80 54.7 0.57 0.02 7.7 81 1 3 1 7 1 0 0  
6 1.64 1.80 56.3 0.29 -0.11 10.9 77 3 4 1 7 1 0 0  
7 1.55 1.73 62.3 1.01 0.30 5.5 80 2 2 3 12 4 0 0  
8 1.26 1.69 111.3 1.10 0.25 7.2 82 3 4 5 20 2 1 1  
9 1.37 2.88 113.9 1.08 0.21 6.8 82 2 5 6 20 3 0 1  
10 1.10 1.55 41.2 -0.89 -0.26 17.0 77 3 3 2 4 1 0 0  
11 1.15 1.21 46.5 0.78 0.33 6.0 80 2 2 3 8 3 0 0  
12 1.17 1.21 55.7 0.37 0.13 9.0 84 3 4 5 7 3 1 0  
13 1.10 1.54 60.8 0.58 0.20 8.5 84 3 2 4 11 3 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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