PDBsum entry 9o38

Pore analysis for: 9o38 calculated with

MOLE 2.0

PDB id

9o38

Pores calculated on whole structure

Pores calculated excluding ligands

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12 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.34

2.75

25.3

-2.11

-0.50

18.1

87

2

1

1

2

0

1

0

2

4.65

6.24

27.6

1.56

0.71

0.9

68

0

0

0

7

3

0

0

3

1.96

2.72

29.2

-1.24

-0.22

18.5

90

4

2

4

2

2

0

0

4

3.80

6.91

29.8

0.17

0.68

3.5

58

1

0

1

4

4

2

0

5

1.97

2.74

33.7

-0.91

-0.19

20.1

90

5

2

5

3

2

0

0

6

2.87

4.03

34.4

2.66

0.64

1.3

77

1

0

1

15

0

1

1

7

2.96

4.08

49.8

2.15

0.69

2.3

71

2

0

2

15

2

3

2

8

1.18

1.56

78.4

1.81

0.59

4.5

77

2

1

1

18

3

2

1

9

1.20

1.58

80.0

1.64

0.48

4.7

79

3

1

3

20

1

3

2

10

1.20

1.19

81.6

-1.23

-0.40

16.7

82

8

5

7

8

4

1

2

11

1.19

1.56

86.5

1.89

0.64

3.6

72

2

1

2

22

4

2

1

12

1.21

1.32

99.9

-2.46

-0.67

25.2

85

9

8

7

2

2

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.