 |
PDBsum entry 9o38
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 9o38 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
9o38
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
7 tunnels,
coloured by tunnel radius |
|
7 tunnels,
coloured by
tunnel radius
|
7 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.44 |
1.44 |
19.6 |
-2.13 |
-0.84 |
12.6 |
80 |
|
2 |
2 |
5 |
2 |
0 |
0 |
0 |
|
|
 |
|
2 |
 |
1.45 |
1.54 |
25.1 |
-1.13 |
-0.67 |
5.1 |
88 |
1 |
0 |
4 |
3 |
0 |
0 |
0 |
|
|
3 |
 |
1.42 |
1.52 |
28.6 |
-0.95 |
-0.45 |
6.1 |
82 |
2 |
0 |
6 |
5 |
1 |
0 |
0 |
|
|
4 |
 |
1.44 |
1.53 |
28.9 |
-1.35 |
-0.53 |
13.9 |
81 |
4 |
1 |
2 |
4 |
0 |
0 |
0 |
|
|
5 |
 |
1.11 |
1.11 |
31.9 |
-0.94 |
-0.54 |
7.3 |
82 |
2 |
1 |
4 |
4 |
0 |
0 |
0 |
|
|
6 |
 |
1.02 |
2.30 |
25.0 |
-0.89 |
0.14 |
14.3 |
74 |
3 |
0 |
4 |
2 |
3 |
0 |
0 |
|
 |
7 |
 |
1.19 |
2.44 |
26.9 |
1.33 |
0.47 |
2.3 |
89 |
2 |
0 |
3 |
7 |
1 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program