PDBsum entry 9n4l Go to PDB code:  Pore analysis for: 9n4l calculated with MOLE 2.0 PDB id 9n4l Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   17 pores, coloured by radius 27 pores, coloured by radius 27 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.39 2.55 54.7 -2.06 -0.60 25.5 85 6 6 6 2 0 1 1  NAG 1003 B NAG 1 L 2 2.89 3.18 63.3 -1.83 -0.66 24.0 89 4 10 7 4 0 1 0  NAG 1 L 3 3.73 4.18 65.9 -2.17 -0.20 19.4 75 7 4 5 2 3 4 1   4 1.49 1.51 76.5 -1.79 -0.21 17.6 68 6 6 2 2 5 8 1   5 1.10 1.10 82.3 0.10 0.21 10.6 83 5 5 3 12 5 0 0   6 2.44 2.60 87.9 -2.02 -0.44 23.7 82 9 6 6 3 3 1 1  NAG 1003 B 7 3.68 4.11 94.6 -2.41 -0.46 31.7 82 12 12 5 4 3 0 0   8 1.39 2.87 98.1 1.13 0.61 5.2 74 4 2 5 21 6 1 1   9 1.41 1.42 101.6 -1.96 -0.12 19.3 74 9 7 5 5 6 5 0   10 1.44 1.47 114.0 0.28 0.24 7.9 71 4 2 5 15 7 3 1   11 2.12 3.97 115.4 -2.35 -0.41 28.9 80 11 8 5 3 4 0 0   12 2.11 3.96 118.6 -2.24 -0.61 26.3 83 12 8 6 2 1 1 1  NAG 1003 B 13 1.12 1.30 127.7 0.40 0.41 8.4 72 6 3 5 19 8 4 1   14 2.33 4.22 125.3 -2.60 -0.60 33.4 84 15 14 5 3 1 0 0   15 1.29 1.45 136.6 0.05 0.22 8.9 71 4 5 5 14 8 6 0   16 1.27 1.64 150.9 -0.55 0.00 18.1 75 9 11 6 16 7 3 1   17 2.65 3.62 155.9 -1.94 -0.55 25.2 85 10 15 8 6 3 0 0   18 1.62 1.77 183.6 -0.99 -0.09 19.5 75 9 14 7 15 8 6 1  NAG 1 L 19 1.47 1.51 204.6 -1.06 -0.12 21.7 77 15 13 8 20 10 3 2   20 1.20 1.70 230.4 -0.07 0.19 13.3 73 11 9 11 25 13 5 2   21 1.54 2.04 237.2 -1.21 -0.22 23.2 77 18 16 8 18 8 3 2   22 1.56 1.64 233.5 -1.18 -0.13 21.8 76 15 16 8 18 11 6 2   23 1.47 1.33 262.0 -1.62 -0.23 22.1 83 19 14 14 12 8 3 0  NAG 1 H NAG 2 H BMA 3 H MAN 4 H MAN 5 H 24 1.40 1.40 269.7 -1.18 -0.14 20.6 77 14 17 11 17 11 4 0   25 1.41 1.44 312.6 -2.29 -0.44 26.9 85 27 28 25 10 4 4 4  NAG 1 H NAG 2 H BMA 3 H MAN 4 H MAN 5 H 26 1.60 1.63 374.2 -1.81 -0.30 24.2 85 36 34 26 18 11 4 0   27 1.18 1.24 26.6 3.00 1.02 1.9 70 1 0 1 11 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.